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The map label for this gene is nopB

Identifier: 16520037

GI number: 16520037

Start: 83722

End: 84216

Strand: Reverse

Name: nopB

Synonym: NGR_a00680

Alternate gene names: 16520037

Gene position: 84216-83722 (Counterclockwise)

Preceding gene: 16520027

Following gene: 16520038

Centisome position: 15.71

GC content: 57.78

Gene sequence:

>495_bases
ATGATGCTGCCTGTCACGTCAATCTCTAACAGTCTCCCCAGGGTCGCGTCATCGTCATTCGGCGAGCAGGCTCAGTTTGA
GCGTGCTCTGGCACAGGCGGCTGATTCGATGAAAAACGATACTGCTTCAACGCCAGTGAGGACGGCGCCTATTTCTCCGC
CGATGGACGTTCACCGCGCGGCGCCAACGAGCCCGCTGGAGGATCGCGTGCTGCAGACGATTTCTTCGATTTGCCCGGAT
AGTATAGTTGCTGCTGCCGCGCCCAACCATAAGGCGGCCCTTATAAGCGGCGCTCCGCCCGGGCCGTCGCAGAAGCTCCC
TGTCGAAGGTGGGGCGGGCACCGAAAGGTTGGGAATCCCGCAAGGGGGGCATGATTTTGACGTGATGGTTGCCGGTCTGC
GGGATCTTTATAATGGCGTGACCCAAGTTGCTCTTGTTTCGAAGGGTATCAGCGGCATCACCTCATCCGTAAACAAACTA
TTAAAGGAAGGGTGA

Upstream 100 bases:

>100_bases
TCACTCTTCAATGGGCAAGCGACGCTGCCGGTAGTCAGCGTGTCGTCAGCTCGCCTCGCTAGAGTTCCACGTCAAAGAGT
TAAGTAATCGAGTCCTTCTC

Downstream 100 bases:

>100_bases
GTTGCGCGCATGTTCGGCTCAGCCCATGGCGACACAACGAGCAGCGACACGTCTGGCCGGCGACCGCTTCGCCTCGTCGT
GCTGCCACTTCTCCTGGCTC

Product: nodulation protein NopB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MMLPVTSISNSLPRVASSSFGEQAQFERALAQAADSMKNDTASTPVRTAPISPPMDVHRAAPTSPLEDRVLQTISSICPD
SIVAAAAPNHKAALISGAPPGPSQKLPVEGGAGTERLGIPQGGHDFDVMVAGLRDLYNGVTQVALVSKGISGITSSVNKL
LKEG

Sequences:

>Translated_164_residues
MMLPVTSISNSLPRVASSSFGEQAQFERALAQAADSMKNDTASTPVRTAPISPPMDVHRAAPTSPLEDRVLQTISSICPD
SIVAAAAPNHKAALISGAPPGPSQKLPVEGGAGTERLGIPQGGHDFDVMVAGLRDLYNGVTQVALVSKGISGITSSVNKL
LKEG
>Mature_164_residues
MMLPVTSISNSLPRVASSSFGEQAQFERALAQAADSMKNDTASTPVRTAPISPPMDVHRAAPTSPLEDRVLQTISSICPD
SIVAAAAPNHKAALISGAPPGPSQKLPVEGGAGTERLGIPQGGHDFDVMVAGLRDLYNGVTQVALVSKGISGITSSVNKL
LKEG

Specific function: Regulates cultivar-specific nodulation of soybean [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016775
- ProDom:   PD034734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16838; Mature: 16838

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLPVTSISNSLPRVASSSFGEQAQFERALAQAADSMKNDTASTPVRTAPISPPMDVHRA
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHC
APTSPLEDRVLQTISSICPDSIVAAAAPNHKAALISGAPPGPSQKLPVEGGAGTERLGIP
CCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
QGGHDFDVMVAGLRDLYNGVTQVALVSKGISGITSSVNKLLKEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMLPVTSISNSLPRVASSSFGEQAQFERALAQAADSMKNDTASTPVRTAPISPPMDVHRA
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHC
APTSPLEDRVLQTISSICPDSIVAAAAPNHKAALISGAPPGPSQKLPVEGGAGTERLGIP
CCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
QGGHDFDVMVAGLRDLYNGVTQVALVSKGISGITSSVNKLLKEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8412662 [H]