Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519926

GI number: 16519926

Start: 227766

End: 229202

Strand: Direct

Name: Not Available

Synonym: NGR_a01790

Alternate gene names: NA

Gene position: 227766-229202 (Clockwise)

Preceding gene: 16519930

Following gene: 16519925

Centisome position: 42.48

GC content: 53.79

Gene sequence:

>1437_bases
GTGAGTGGGAAAATCATGTTCGGGACAGCACGCTCCTTCACTCTGGCTCTTTATGATGTACGCGTTCGCCGATTGTGCAT
GCGCAATTACAGCCGGGAGTGGGCACCGTCCTCAGCGGCTGAAACAACTGATGCAGATCGCCTGGGCCACCCACAGAACG
TAACAGCAGAGGCAGATAAAATGCGAAAAGCGCTCATTTTAATTGAAAATACGCGGACTAATGGCCGGTCGTACGTAGAA
GCCGTCCGGCGTCTTCGGCTACATCCAATAATCCTGGCGGCAGATCCAGCACTTTACGACTATGTCGCGGCGGAACGCAT
TGAAGTCGCTCGCGTCGATACAACCAATTTGGATGCTCTGATCGGCGAATATTCTCGGCTGGGTAAGAGTTTCGACATAG
CCGGAGTTACATCTGCCGCAGAGTCGTTCTATGCGACAGTTGGCAAGATCTGTCGGAATTTCAATCTACCTGGACCTGAT
CCGGAATCAATTGAACAATGCTGCAATAAGGCCGCCCAACGTCAGGTCCTTGCGGCAGCCGGAGTTCCCGTGCCTGGCTA
TCGGTCGGCGACCACAGCCGCCGAAGTACAATGCGTTGCAGCGGAGATCGGCCTGCCAGCAGTACTTAAGCCTGCAGTCG
GCAGCGGTAGCCGAGGAGTCCGCTTGTGTCGCGACGCTCGCGAGCTAGCTGAACACACAGATTATCTATTGGGCGGGAAG
CACATGTGGCGATCTTCACCCGAGGTATTGGTAGAGCAGTTCGTGGATGGCCCTCATTACATCGCCGAGATCATGGGAGA
CGAAGTTATTGGAATAGGCATCACTGAGTATGGCCCACCGCCGCATTTCGTGTTCCGCCAGTTGACCTTTCCTGCACCCT
TGACCGATGAGCAGTACGAGCGTGCCGTTGATGTTGTACAACGCTGCCTCCGGGCACTCGGCCTTGGCTGGGGACCAACG
AACATTGAGTTCCGGTGGACCGAGGTCGGTCCAGTCGTTATTGAAGTCAACCCGCGACTTGCTGGTAATCCTGATCCGCA
ATTGGTTCAGCTGGCCTTCGACGTCGATCTCATCGGCGAGCACATCAAGCTTGCTATTGGTGAACAATGCAATTTGTCGA
AGAGGCAGTCACGAACAGCGACCGCCCGATCCTTGATTGCGGATCGCGATGGCACACTTGATTACATTGATGGTATCGAC
CGGGCGGCAGCTATACCCGGTGTCGCGGACGTCAAATTGTATGTTAGACCAGGAACGCCAATAGTCAGAAATGGTGATTA
CTGTGACCGAATTGGATATGTCGTTGCTGTAGCGCCCTCGCGCTCCAGCGCTGATACGATAATTCAACGCGCAGTTGAAT
CAATCGATTGGTCTATTTCACCATTCTCGGACCTTCATGATCAGGAACAATATACTCCGCTGTACTTTCCGGACTAA

Upstream 100 bases:

>100_bases
CTTCGGTTGCCAACATTAGGAATAGACGACGACGAATGGCTCCTCTGGACGACTCGCGACGAGCTTCTCAAGATGCTCTC
GAATACGTCAGAAGTCGCCC

Downstream 100 bases:

>100_bases
CCAGTTGTGAGCTTTCCATAGACTATCCATCGGATCCGGACGAGAAAGCTGAGGCTGTCGACGCTTCAGTGATTCGAAAC
CGACCAGCAGACCCCATCTG

Product: dicarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MSGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADKMRKALILIENTRTNGRSYVE
AVRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDALIGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPD
PESIEQCCNKAAQRQVLAAAGVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGK
HMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYERAVDVVQRCLRALGLGWGPT
NIEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGEHIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGID
RAAAIPGVADVKLYVRPGTPIVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD

Sequences:

>Translated_478_residues
MSGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADKMRKALILIENTRTNGRSYVE
AVRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDALIGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPD
PESIEQCCNKAAQRQVLAAAGVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGK
HMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYERAVDVVQRCLRALGLGWGPT
NIEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGEHIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGID
RAAAIPGVADVKLYVRPGTPIVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD
>Mature_477_residues
SGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADKMRKALILIENTRTNGRSYVEA
VRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDALIGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPDP
ESIEQCCNKAAQRQVLAAAGVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGKH
MWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYERAVDVVQRCLRALGLGWGPTN
IEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGEHIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGIDR
AAAIPGVADVKLYVRPGTPIVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD

Specific function: Unknown

COG id: COG0439

COG function: function code I; Biotin carboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ATP-grasp domain

Homologues:

Organism=Homo sapiens, GI148839342, Length=343, Percent_Identity=23.9067055393586, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI261245046, Length=343, Percent_Identity=23.9067055393586, Blast_Score=73, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4RH_RHISN (P55641)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444046.1
- ProteinModelPortal:   P55641
- GeneID:   962409
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01790
- HOGENOM:   HBG653769
- ProtClustDB:   CLSK506517
- InterPro:   IPR011761
- InterPro:   IPR013815
- InterPro:   IPR013816
- InterPro:   IPR005479
- Gene3D:   G3DSA:3.30.1490.20
- Gene3D:   G3DSA:3.30.470.20

Pfam domain/function: PF02786 CPSase_L_D2

EC number: NA

Molecular weight: Translated: 52473; Mature: 52342

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50975 ATP_GRASP; PS00867 CPSASE_2

Important sites: ACT_SITE 339-339

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADK
CCCCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHH
MRKALILIENTRTNGRSYVEAVRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDAL
HCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHEEEEECCCCCHHHH
IGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPDPESIEQCCNKAAQRQVLAAA
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGK
CCCCCCCCCCCHHHHHEEEHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH
HMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYE
HHHCCCHHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHH
RAVDVVQRCLRALGLGWGPTNIEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGE
HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEECHHHHCC
HIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGIDRAAAIPGVADVKLYVRPGTP
HHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHCCCCCEEEEEEEECCCC
IVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD
EEECCCHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHCCCCCCCCC
>Mature Secondary Structure 
SGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADK
CCCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHH
MRKALILIENTRTNGRSYVEAVRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDAL
HCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHEEEEECCCCCHHHH
IGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPDPESIEQCCNKAAQRQVLAAA
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGK
CCCCCCCCCCCHHHHHEEEHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH
HMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYE
HHHCCCHHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHH
RAVDVVQRCLRALGLGWGPTNIEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGE
HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEECHHHHCC
HIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGIDRAAAIPGVADVKLYVRPGTP
HHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHCCCCCEEEEEEEECCCC
IVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD
EEECCCHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424