Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519926
GI number: 16519926
Start: 227766
End: 229202
Strand: Direct
Name: Not Available
Synonym: NGR_a01790
Alternate gene names: NA
Gene position: 227766-229202 (Clockwise)
Preceding gene: 16519930
Following gene: 16519925
Centisome position: 42.48
GC content: 53.79
Gene sequence:
>1437_bases GTGAGTGGGAAAATCATGTTCGGGACAGCACGCTCCTTCACTCTGGCTCTTTATGATGTACGCGTTCGCCGATTGTGCAT GCGCAATTACAGCCGGGAGTGGGCACCGTCCTCAGCGGCTGAAACAACTGATGCAGATCGCCTGGGCCACCCACAGAACG TAACAGCAGAGGCAGATAAAATGCGAAAAGCGCTCATTTTAATTGAAAATACGCGGACTAATGGCCGGTCGTACGTAGAA GCCGTCCGGCGTCTTCGGCTACATCCAATAATCCTGGCGGCAGATCCAGCACTTTACGACTATGTCGCGGCGGAACGCAT TGAAGTCGCTCGCGTCGATACAACCAATTTGGATGCTCTGATCGGCGAATATTCTCGGCTGGGTAAGAGTTTCGACATAG CCGGAGTTACATCTGCCGCAGAGTCGTTCTATGCGACAGTTGGCAAGATCTGTCGGAATTTCAATCTACCTGGACCTGAT CCGGAATCAATTGAACAATGCTGCAATAAGGCCGCCCAACGTCAGGTCCTTGCGGCAGCCGGAGTTCCCGTGCCTGGCTA TCGGTCGGCGACCACAGCCGCCGAAGTACAATGCGTTGCAGCGGAGATCGGCCTGCCAGCAGTACTTAAGCCTGCAGTCG GCAGCGGTAGCCGAGGAGTCCGCTTGTGTCGCGACGCTCGCGAGCTAGCTGAACACACAGATTATCTATTGGGCGGGAAG CACATGTGGCGATCTTCACCCGAGGTATTGGTAGAGCAGTTCGTGGATGGCCCTCATTACATCGCCGAGATCATGGGAGA CGAAGTTATTGGAATAGGCATCACTGAGTATGGCCCACCGCCGCATTTCGTGTTCCGCCAGTTGACCTTTCCTGCACCCT TGACCGATGAGCAGTACGAGCGTGCCGTTGATGTTGTACAACGCTGCCTCCGGGCACTCGGCCTTGGCTGGGGACCAACG AACATTGAGTTCCGGTGGACCGAGGTCGGTCCAGTCGTTATTGAAGTCAACCCGCGACTTGCTGGTAATCCTGATCCGCA ATTGGTTCAGCTGGCCTTCGACGTCGATCTCATCGGCGAGCACATCAAGCTTGCTATTGGTGAACAATGCAATTTGTCGA AGAGGCAGTCACGAACAGCGACCGCCCGATCCTTGATTGCGGATCGCGATGGCACACTTGATTACATTGATGGTATCGAC CGGGCGGCAGCTATACCCGGTGTCGCGGACGTCAAATTGTATGTTAGACCAGGAACGCCAATAGTCAGAAATGGTGATTA CTGTGACCGAATTGGATATGTCGTTGCTGTAGCGCCCTCGCGCTCCAGCGCTGATACGATAATTCAACGCGCAGTTGAAT CAATCGATTGGTCTATTTCACCATTCTCGGACCTTCATGATCAGGAACAATATACTCCGCTGTACTTTCCGGACTAA
Upstream 100 bases:
>100_bases CTTCGGTTGCCAACATTAGGAATAGACGACGACGAATGGCTCCTCTGGACGACTCGCGACGAGCTTCTCAAGATGCTCTC GAATACGTCAGAAGTCGCCC
Downstream 100 bases:
>100_bases CCAGTTGTGAGCTTTCCATAGACTATCCATCGGATCCGGACGAGAAAGCTGAGGCTGTCGACGCTTCAGTGATTCGAAAC CGACCAGCAGACCCCATCTG
Product: dicarboxylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 478; Mature: 477
Protein sequence:
>478_residues MSGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADKMRKALILIENTRTNGRSYVE AVRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDALIGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPD PESIEQCCNKAAQRQVLAAAGVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGK HMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYERAVDVVQRCLRALGLGWGPT NIEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGEHIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGID RAAAIPGVADVKLYVRPGTPIVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD
Sequences:
>Translated_478_residues MSGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADKMRKALILIENTRTNGRSYVE AVRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDALIGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPD PESIEQCCNKAAQRQVLAAAGVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGK HMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYERAVDVVQRCLRALGLGWGPT NIEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGEHIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGID RAAAIPGVADVKLYVRPGTPIVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD >Mature_477_residues SGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADKMRKALILIENTRTNGRSYVEA VRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDALIGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPDP ESIEQCCNKAAQRQVLAAAGVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGKH MWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYERAVDVVQRCLRALGLGWGPTN IEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGEHIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGIDR AAAIPGVADVKLYVRPGTPIVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD
Specific function: Unknown
COG id: COG0439
COG function: function code I; Biotin carboxylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain
Homologues:
Organism=Homo sapiens, GI148839342, Length=343, Percent_Identity=23.9067055393586, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI261245046, Length=343, Percent_Identity=23.9067055393586, Blast_Score=73, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4RH_RHISN (P55641)
Other databases:
- EMBL: U00090 - RefSeq: NP_444046.1 - ProteinModelPortal: P55641 - GeneID: 962409 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01790 - HOGENOM: HBG653769 - ProtClustDB: CLSK506517 - InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR005479 - Gene3D: G3DSA:3.30.1490.20 - Gene3D: G3DSA:3.30.470.20
Pfam domain/function: PF02786 CPSase_L_D2
EC number: NA
Molecular weight: Translated: 52473; Mature: 52342
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS50975 ATP_GRASP; PS00867 CPSASE_2
Important sites: ACT_SITE 339-339
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADK CCCCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHH MRKALILIENTRTNGRSYVEAVRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDAL HCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHEEEEECCCCCHHHH IGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPDPESIEQCCNKAAQRQVLAAA HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC GVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGK CCCCCCCCCCCHHHHHEEEHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH HMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYE HHHCCCHHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHH RAVDVVQRCLRALGLGWGPTNIEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGE HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEECHHHHCC HIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGIDRAAAIPGVADVKLYVRPGTP HHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHCCCCCEEEEEEEECCCC IVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD EEECCCHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHCCCCCCCCC >Mature Secondary Structure SGKIMFGTARSFTLALYDVRVRRLCMRNYSREWAPSSAAETTDADRLGHPQNVTAEADK CCCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHH MRKALILIENTRTNGRSYVEAVRRLRLHPIILAADPALYDYVAAERIEVARVDTTNLDAL HCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHEEEEECCCCCHHHH IGEYSRLGKSFDIAGVTSAAESFYATVGKICRNFNLPGPDPESIEQCCNKAAQRQVLAAA HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC GVPVPGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDARELAEHTDYLLGGK CCCCCCCCCCCHHHHHEEEHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH HMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPPPHFVFRQLTFPAPLTDEQYE HHHCCCHHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHH RAVDVVQRCLRALGLGWGPTNIEFRWTEVGPVVIEVNPRLAGNPDPQLVQLAFDVDLIGE HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEECHHHHCC HIKLAIGEQCNLSKRQSRTATARSLIADRDGTLDYIDGIDRAAAIPGVADVKLYVRPGTP HHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHCCCCCEEEEEEEECCCC IVRNGDYCDRIGYVVAVAPSRSSADTIIQRAVESIDWSISPFSDLHDQEQYTPLYFPD EEECCCHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424