Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519918
GI number: 16519918
Start: 236827
End: 237753
Strand: Direct
Name: Not Available
Synonym: NGR_a01870
Alternate gene names: 16519918
Gene position: 236827-237753 (Clockwise)
Preceding gene: 16519922
Following gene: 16519917
Centisome position: 44.17
GC content: 60.3
Gene sequence:
>927_bases ATGGGACGGCTGTTTGGCAGCCTATTCCATCAGACAGAGGAGCTCGTCATGACCCCACTTCGCCAGCGCATGAGCGAGGA CATGCAGGTGCGCAATTTCTCGCTCAATACCCAGCTTTCATATCTGCGGCAGGTGTCGCTGTTTGCACGACACTTCGGCA AGGCGCCGGACTTGCTCGGCCGCGAGGATATTCGGACCTATCAGGTCTATCTGGCCAACGAGAAGAAGCTGGCGCCTAAC TCAATCCATATCGCCATTGCGGCGTTGCGCTTTTTCTTCAGCGTCACACTCGAGAGGGACTGGGTGCCTGCAGAGGTATT GCCGCTTCCGAAGAAGCCGCAGAAGCTGCCGATCATCCTCAGTCCGGATGAAGTACAGCACTTTCTCGGCTGCGTGCTTG ATCTCAAACACCACGCCATCCTGACGACGTGCTATGCCGCTGGCTTGCGCATCTCGGAAGCGGTTCAGCTGAAGCCCACG GACATCGACAGCCAGAGAATGGTCGTCCGTGTCGAGCAGGGTAAAGGCCAGAAGGACCGCTATGTGATGTTGTCGCCCAA GCTCCTGGAGATCCTGCGCGACTATTGGAGGATGCCGCGGCCAAAAGAGTGGCTCTTCCCCGGAGATCGCGCCGGCCACC CGATCACTCGGGATGCAGTCGGGCAAGCCTGTGCGAAAGCGCACGATCTCTCCCGCTTGTCCAAACCGGTGACGCCACAT AGCTTGCGGCATGCCTTCGCCGTCCATCTCCTTGAGGCCGGCGCCGACGTGCGCACCATTCAATTGCTGCTCGGTCACCG CAGCCTCGCGACCACCGCCCACTACCTGCGCATCGCCACCAACAAAGTCTGCGCCACCTCAAGCCCGTTCGAGCTTTTGC CCCGTCCGGCGCCCACGCCGCCGCCCGCCAAACCTGAGTATTTCTGA
Upstream 100 bases:
>100_bases TAATCTCGCCCGGCACATAATCGCATTTGGACTAACCCGCTCCGCTACCGCGGAGCGGCAAGGAGGTCATGTATTCAGTA GGAGCCCCAACTGCGCGACG
Downstream 100 bases:
>100_bases GCTCCCGATGGCCCGTTCGGGGCCGGAAGTGGCGGATATCTTCCGTCGCTACGGCGAGGCCTATCGTGCCCAGCACACGT CGCTTTCGACCGCGCAGCGC
Product: DNA integration/recombination/inversion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MGRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLGREDIRTYQVYLANEKKLAPN SIHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIILSPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPT DIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPH SLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTPPPAKPEYF
Sequences:
>Translated_308_residues MGRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLGREDIRTYQVYLANEKKLAPN SIHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIILSPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPT DIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPH SLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTPPPAKPEYF >Mature_307_residues GRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLGREDIRTYQVYLANEKKLAPNS IHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIILSPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPTD IDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPHS LRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTPPPAKPEYF
Specific function: May function as an integrase
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'phage' integrase family
Homologues:
Organism=Escherichia coli, GI1789261, Length=273, Percent_Identity=34.4322344322344, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1790244, Length=226, Percent_Identity=30.5309734513274, Blast_Score=87, Evalue=9e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4QK_RHISN (P55632)
Other databases:
- EMBL: U00090 - RefSeq: NP_444038.1 - ProteinModelPortal: P55632 - SMR: P55632 - GeneID: 962408 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01870 - HOGENOM: HBG727654 - ProtClustDB: CLSK544552 - InterPro: IPR011010 - InterPro: IPR013762 - InterPro: IPR002104 - InterPro: IPR023109 - InterPro: IPR004107 - Gene3D: G3DSA:1.10.150.130 - Gene3D: G3DSA:1.10.443.10
Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz
EC number: NA
Molecular weight: Translated: 34958; Mature: 34827
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: ACT_SITE 275-275
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC REDIRTYQVYLANEKKLAPNSIHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIIL CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEE SPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDR CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCC YVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPH EEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH SLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTP HHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCC PPAKPEYF CCCCCCCC >Mature Secondary Structure GRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC REDIRTYQVYLANEKKLAPNSIHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIIL CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEE SPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDR CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCC YVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPH EEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH SLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTP HHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCC PPAKPEYF CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424