Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519908
GI number: 16519908
Start: 256833
End: 258035
Strand: Reverse
Name: Not Available
Synonym: NGR_a01970
Alternate gene names: NA
Gene position: 258035-256833 (Counterclockwise)
Preceding gene: 16519906
Following gene: 16519912
Centisome position: 48.13
GC content: 58.27
Gene sequence:
>1203_bases ATGGCTATCGAAAAAGAACTTCTGGACCAGCTTCTCGCCGGTCGTGATCCATCCGAGGTTTTCGGCAAGGACGGGTTGCT GGACGATCTGAAGAAAGCGCTCTCGGAGCGCATCTTAAATGCGGAGCTCGACGAGCATCTTGACGTCGAGCGTAGCGAGG GAACAGCCGCCAACCGCCGCAATGGCTCTTCGAAGAAGACGGTTTTGACTGGGACGTCGAAAATGACGCTCACCATCCCG CGCGATCGGGCCGGCACGTTCGACCCGAAACTGATCGCGAGATATCAGCGCCGCTTTCCCGATTTCGACGACAAGATCAT TTCCATGTATGCCCGCGGCATGACGGTGCGCGAGATCCAGGGCCATCTCGAAGACATCTACGGCATCGACGTGTCGCCGG ACCTGATTTCGGCGGTGACAGACCAGGTTCTGGAAGCCGTTGGGGAATGGCAGAATAGGCCGCTCGAGCTTTGCTATCCA CTCGTGTTCTTCGATGCCATCCGGGTCAAGATCCGGGACGAAGGTTTCGTTCGCAACAAGGCGGTCTATGTTGCGCTCGC CGTTCTGGCGGACGGTACCAAGGAAATCCTCGGGCTCTGGATCGAGCAGACGGAAGGGGCAAAGTTCTGGCTTCGGGTGA TGAACGAACTGAAGAGCCGCGGCTGCCAGGACATCCTGATCGCCGTGGTCGACGGCCTGAAGGGTTTCCCCGATGCCATC ACCGCCGTCTTTCCCCAAACGATCGTGCAGACCTGCATTGTCCATCTGATCCGGCATTCCCTGGAATTCGTGTCCTACAA GGATAGAAAGCCCGTCGTGCCGGCGTTGAGAGCCATTTACCGTGCTCGGGATGCGGAGGCCGGCCTGAAGGCGCTGGAGG CCTTCGAGGAGGGTTATTGGGGTCAGAAATACCCTGCCATCTCTCAGAGCTGGCGGCGCAATTGGGAACACGTCGTTCCC TTCTTCGCTTTCCCGGAAGGCGTCCGCCGCATCATTTATACCACGAACGCCATAGAGGCCTTGAACTCGAAGCTTCGCCG AGCTGTGCGCTCGCGCGGCCATTTCCCTGGTGACGAAGCCGCGATGAAGCTGTTATATCTGGTTCTCAATAACGCCGCCG AGCAATGGAAGCGCGCGCCGCGGGAATGGGTTGAGGCAAAGACACAGTTTGCCGTTATCTTCGGCGAACGGTTCTTCAAC TGA
Upstream 100 bases:
>100_bases TTGCAATTTCTCAGCAAGCGGGATCAGGTGATAGTCTTGCACGGGACTGTCAGGAATTCTGTGCGGGGGGCCATGATGAT GAAAAGGAGCGAATCATCAC
Downstream 100 bases:
>100_bases TCAAACCGGCCCCCCGCACAGAATTCCTGACAGTCCCGTCTTGCACCCATATGACGTCGTCCTCCCGGAGGGCCTGCTCC AACAGATCTGCGAAAAGTTC
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDEHLDVERSEGTAANRRNGSSKKTVLTGTSKMTLTIP RDRAGTFDPKLIARYQRRFPDFDDKIISMYARGMTVREIQGHLEDIYGIDVSPDLISAVTDQVLEAVGEWQNRPLELCYP LVFFDAIRVKIRDEGFVRNKAVYVALAVLADGTKEILGLWIEQTEGAKFWLRVMNELKSRGCQDILIAVVDGLKGFPDAI TAVFPQTIVQTCIVHLIRHSLEFVSYKDRKPVVPALRAIYRARDAEAGLKALEAFEEGYWGQKYPAISQSWRRNWEHVVP FFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN
Sequences:
>Translated_400_residues MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDEHLDVERSEGTAANRRNGSSKKTVLTGTSKMTLTIP RDRAGTFDPKLIARYQRRFPDFDDKIISMYARGMTVREIQGHLEDIYGIDVSPDLISAVTDQVLEAVGEWQNRPLELCYP LVFFDAIRVKIRDEGFVRNKAVYVALAVLADGTKEILGLWIEQTEGAKFWLRVMNELKSRGCQDILIAVVDGLKGFPDAI TAVFPQTIVQTCIVHLIRHSLEFVSYKDRKPVVPALRAIYRARDAEAGLKALEAFEEGYWGQKYPAISQSWRRNWEHVVP FFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN >Mature_399_residues AIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDEHLDVERSEGTAANRRNGSSKKTVLTGTSKMTLTIPR DRAGTFDPKLIARYQRRFPDFDDKIISMYARGMTVREIQGHLEDIYGIDVSPDLISAVTDQVLEAVGEWQNRPLELCYPL VFFDAIRVKIRDEGFVRNKAVYVALAVLADGTKEILGLWIEQTEGAKFWLRVMNELKSRGCQDILIAVVDGLKGFPDAIT AVFPQTIVQTCIVHLIRHSLEFVSYKDRKPVVPALRAIYRARDAEAGLKALEAFEEGYWGQKYPAISQSWRRNWEHVVPF FAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN
Specific function: Required for the transposition of the insertion element [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 45533; Mature: 45402
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: PS01007 TRANSPOSASE_MUTATOR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDEHLDVERSEGTAANRR CCCHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC NGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPDFDDKIISMYARGMTVREIQ CCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHH GHLEDIYGIDVSPDLISAVTDQVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNK HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCHHHH AVYVALAVLADGTKEILGLWIEQTEGAKFWLRVMNELKSRGCQDILIAVVDGLKGFPDAI HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHH TAVFPQTIVQTCIVHLIRHSLEFVSYKDRKPVVPALRAIYRARDAEAGLKALEAFEEGYW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GQKYPAISQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEA CCCCCHHHHHHHCCHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH AMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECHHHCC >Mature Secondary Structure AIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDEHLDVERSEGTAANRR CCHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC NGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPDFDDKIISMYARGMTVREIQ CCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHH GHLEDIYGIDVSPDLISAVTDQVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNK HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCHHHH AVYVALAVLADGTKEILGLWIEQTEGAKFWLRVMNELKSRGCQDILIAVVDGLKGFPDAI HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHH TAVFPQTIVQTCIVHLIRHSLEFVSYKDRKPVVPALRAIYRARDAEAGLKALEAFEEGYW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GQKYPAISQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEA CCCCCHHHHHHHCCHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH AMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1849509; 1327271; 11481430; 11481432 [H]