Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519840
GI number: 16519840
Start: 352236
End: 352739
Strand: Direct
Name: Not Available
Synonym: NGR_a02650
Alternate gene names: NA
Gene position: 352236-352739 (Clockwise)
Preceding gene: 16519842
Following gene: 16519839
Centisome position: 65.7
GC content: 58.13
Gene sequence:
>504_bases ATGCCGCTACGGCGTTGCCGAGCGTGGCGAGGTCACTCGCAACCGGGCACAGGTTCTCGATCAAACGAAATTCCGAAGCA TCGAAACGTCGTAGCATTTCTCGACGATTTCAGCCACGTAGTCTGCCGCGGTCCCACCGAACAGCGTGTAATCATCGCAG CGGTCGGCAAGCTCGTCGACCGCATTGCCCAAACCGGCAAGGTGGCGGGCGATCAGGTGGCGGTCTTCGTCGCCACCGAG CGCTTCAAGCAGGTCAAACCAAGCGATCAGGCTGGCTTGAGAGACGCGGACGGCCTCGAACAGGCGGGAAAACTCGCCGT CGATGTATTGCAGCTCGAGCTCCTCGATTGGCTGACCGAAAGCATAAACGGCGGTAGCGACTTTTGTTTGATAATCCTCA AAATCGGTGAAGTAGACCCGATGGCGTTGATATTGGCGAAGTTCGTTGACTCCGCCAGCCCGCTGAAACCGGCCGTGCTC ATACATCGGGCTCCTGCGTTTTGA
Upstream 100 bases:
>100_bases GCCCGACGGCTGGTCATCGATAGCCAGAGCGTCAAAACTACCAGCTGGTTGCGCTGGTGGGCCGAGAAGATCGGCAAGCC GAATGTCGTGAAACGCGACA
Downstream 100 bases:
>100_bases TCCTGCGCGCGACCATACGGCTTGCGACCAGTGGGGTGTAGTATTAACGAGGTTGAGTCCGTCGCTATCGCCGTGCTGCC AGCCGACCGATCTTGGTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MPLRRCRAWRGHSQPGTGSRSNEIPKHRNVVAFLDDFSHVVCRGPTEQRVIIAAVGKLVDRIAQTGKVAGDQVAVFVATE RFKQVKPSDQAGLRDADGLEQAGKLAVDVLQLELLDWLTESINGGSDFCLIILKIGEVDPMALILAKFVDSASPLKPAVL IHRAPAF
Sequences:
>Translated_167_residues MPLRRCRAWRGHSQPGTGSRSNEIPKHRNVVAFLDDFSHVVCRGPTEQRVIIAAVGKLVDRIAQTGKVAGDQVAVFVATE RFKQVKPSDQAGLRDADGLEQAGKLAVDVLQLELLDWLTESINGGSDFCLIILKIGEVDPMALILAKFVDSASPLKPAVL IHRAPAF >Mature_166_residues PLRRCRAWRGHSQPGTGSRSNEIPKHRNVVAFLDDFSHVVCRGPTEQRVIIAAVGKLVDRIAQTGKVAGDQVAVFVATER FKQVKPSDQAGLRDADGLEQAGKLAVDVLQLELLDWLTESINGGSDFCLIILKIGEVDPMALILAKFVDSASPLKPAVLI HRAPAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4LJ_RHISN (P55550)
Other databases:
- EMBL: U00090 - RefSeq: NP_443960.1 - GeneID: 962631 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a02650
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18146; Mature: 18015
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLRRCRAWRGHSQPGTGSRSNEIPKHRNVVAFLDDFSHVVCRGPTEQRVIIAAVGKLVD CCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHEECCCCCCHHHHHHHHHHHH RIAQTGKVAGDQVAVFVATERFKQVKPSDQAGLRDADGLEQAGKLAVDVLQLELLDWLTE HHHHHCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SINGGSDFCLIILKIGEVDPMALILAKFVDSASPLKPAVLIHRAPAF HCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCC >Mature Secondary Structure PLRRCRAWRGHSQPGTGSRSNEIPKHRNVVAFLDDFSHVVCRGPTEQRVIIAAVGKLVD CHHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHEECCCCCCHHHHHHHHHHHH RIAQTGKVAGDQVAVFVATERFKQVKPSDQAGLRDADGLEQAGKLAVDVLQLELLDWLTE HHHHHCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SINGGSDFCLIILKIGEVDPMALILAKFVDSASPLKPAVLIHRAPAF HCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424