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Identifier: 16519663

GI number: 16519663

Start: 31606

End: 32979

Strand: Reverse

Name: Not Available

Synonym: NGR_a00240

Alternate gene names: NA

Gene position: 32979-31606 (Counterclockwise)

Preceding gene: 16519658

Following gene: 16519664

Centisome position: 6.15

GC content: 62.59

Gene sequence:

>1374_bases
ATGGGATTGATTGCGATGAGCGAGCGCGACCTGCAGCGGATTGAGGTTTTGTCGAAGGTGATCGACGGCCGCATGACGAT
GGTGTCGGCGGCGCATGTCCTGGGCTTAAGCACGCGCCAGGTGCGTCGGCTGCTGGATCGGATCAGCGCTGGCGGTGCGG
CGTCGATCCGCCACAAGGCGATCGGTCGCCCATCGAACAATCGGATTTGCGACGGCGTGCGCGATTATGCCATGGCGATC
GTGCGCGAGCGCTATGCGGATTTCGGTCCGACGCTGGCGGCTGAGAAGCTAGCGGAGCTTGATGGCCTGACGGTGTCGCG
CGAGACCTTGCGCCAATGGATGGCGGACGCCGGTCTGTGGCTGTCGCGCAAGCAGCGGCGGACGTTTCATCAGCCGCGGT
TGCGGCGCGAGGCCTATGGCGAACTGGTGCAGATCGACGGTTCCGAGCATCGCTGGTTCGAGGATCGCGGTGACCCCTGT
TCATTGCTGGTGTTCATCGATGACGCGACCGGCAAGCTGATGCAGTTGCGCTTCGTACGATCGGAAAGCGCGTTTACGTA
TTTCGAGGCGCTGGAGCTCTATCTGAAGGCGCATGGTGCTCCGGTCGCCTTCTATTCCGACAAGCATTCGGTGTTCCGGG
TGGCGAAGAAGGACGCCAAGGGCGGCCAGGGCATGACCCAGTTCGGGCGTGCACTTTGCGAGTTAAACATCGAGATTCTT
TGCGCAAACTCGAGCCAAGCCAAGGGCCGAGTCGAGCGGATGAACCGGACGCTACAGGACCGGTTGATCAAGGATCTGCG
CCTGGAGGGCATCTGCGGCATGGACGACGGCAACGCTTTCCTGCCTCGGTTCATGGAGCGCTATAACCGGCAATTCGCCA
TTACCCCTGCCCGGTCTGATGATCTGCATCGGCCGCTGAACCTTGCCCCGGATCGGCTGCGCGACGTCCTGTGCAAACGT
GAGCAGCGTTATGTCGGTGCGCAGCTGACGTTTTCGTTCGAGCGCCAGCGGATCATGCTCGAGGAGAACGAAGTGACGCG
CGGACTGGTCGGTCGCTATGTCGAGACCCATGCCTATGCCGACGGCCGGCTCGATGTGCGCTGGAAGGGGCATTCCCTGC
CCTACCGGGTGTTCGACAAGGACCAGCGGGTGACGCATGCGGCGATCATCGAGAACAAGCGGCTTTCCGATGTGCTGGCC
TACATCAAGGAGCGCCAGGACGAGCGGCCGGCGCCGAAGGTCAGGACCAACAGCGAGAAGAACGGCTACACGCCGCGCGG
TCGCAAGCCGGGCAAGCGGACGGATTTCATGAACGATCCCGTGGTCATCGCCCGGCGGCGGCAGGCGCTCTCCAATCTTG
ATGCCGCGGAATGA

Upstream 100 bases:

>100_bases
ATAGCTGTGACATTTTTTGTAGCCGCAAAGTTAAAGTGTCCTGTTCCTGCAAAGTAAGAATGTCACTCTCCCCGCGTTTT
GATGGCGTGGGAGATTGCGG

Downstream 100 bases:

>100_bases
TCCATTGATCTGGCTGTCAAGGCTAAAGCCGATAGGTGCCCCTCACCCGCCCCGATCTCACCTTGCAACCCGGACCAGCC
GGTCAGATCGGGGCTGGTCG

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MGLIAMSERDLQRIEVLSKVIDGRMTMVSAAHVLGLSTRQVRRLLDRISAGGAASIRHKAIGRPSNNRICDGVRDYAMAI
VRERYADFGPTLAAEKLAELDGLTVSRETLRQWMADAGLWLSRKQRRTFHQPRLRREAYGELVQIDGSEHRWFEDRGDPC
SLLVFIDDATGKLMQLRFVRSESAFTYFEALELYLKAHGAPVAFYSDKHSVFRVAKKDAKGGQGMTQFGRALCELNIEIL
CANSSQAKGRVERMNRTLQDRLIKDLRLEGICGMDDGNAFLPRFMERYNRQFAITPARSDDLHRPLNLAPDRLRDVLCKR
EQRYVGAQLTFSFERQRIMLEENEVTRGLVGRYVETHAYADGRLDVRWKGHSLPYRVFDKDQRVTHAAIIENKRLSDVLA
YIKERQDERPAPKVRTNSEKNGYTPRGRKPGKRTDFMNDPVVIARRRQALSNLDAAE

Sequences:

>Translated_457_residues
MGLIAMSERDLQRIEVLSKVIDGRMTMVSAAHVLGLSTRQVRRLLDRISAGGAASIRHKAIGRPSNNRICDGVRDYAMAI
VRERYADFGPTLAAEKLAELDGLTVSRETLRQWMADAGLWLSRKQRRTFHQPRLRREAYGELVQIDGSEHRWFEDRGDPC
SLLVFIDDATGKLMQLRFVRSESAFTYFEALELYLKAHGAPVAFYSDKHSVFRVAKKDAKGGQGMTQFGRALCELNIEIL
CANSSQAKGRVERMNRTLQDRLIKDLRLEGICGMDDGNAFLPRFMERYNRQFAITPARSDDLHRPLNLAPDRLRDVLCKR
EQRYVGAQLTFSFERQRIMLEENEVTRGLVGRYVETHAYADGRLDVRWKGHSLPYRVFDKDQRVTHAAIIENKRLSDVLA
YIKERQDERPAPKVRTNSEKNGYTPRGRKPGKRTDFMNDPVVIARRRQALSNLDAAE
>Mature_456_residues
GLIAMSERDLQRIEVLSKVIDGRMTMVSAAHVLGLSTRQVRRLLDRISAGGAASIRHKAIGRPSNNRICDGVRDYAMAIV
RERYADFGPTLAAEKLAELDGLTVSRETLRQWMADAGLWLSRKQRRTFHQPRLRREAYGELVQIDGSEHRWFEDRGDPCS
LLVFIDDATGKLMQLRFVRSESAFTYFEALELYLKAHGAPVAFYSDKHSVFRVAKKDAKGGQGMTQFGRALCELNIEILC
ANSSQAKGRVERMNRTLQDRLIKDLRLEGICGMDDGNAFLPRFMERYNRQFAITPARSDDLHRPLNLAPDRLRDVLCKRE
QRYVGAQLTFSFERQRIMLEENEVTRGLVGRYVETHAYADGRLDVRWKGHSLPYRVFDKDQRVTHAAIIENKRLSDVLAY
IKERQDERPAPKVRTNSEKNGYTPRGRKPGKRTDFMNDPVVIARRRQALSNLDAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4BF_RHISN (P55373)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443783.1
- ProteinModelPortal:   P55373
- GeneID:   962260
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00240
- HOGENOM:   HBG457040
- ProtClustDB:   CLSK782128
- GO:   GO:0032196
- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337

Pfam domain/function: PF00665 rve; SSF46689 Homeodomain_like; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 52386; Mature: 52255

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLIAMSERDLQRIEVLSKVIDGRMTMVSAAHVLGLSTRQVRRLLDRISAGGAASIRHKA
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
IGRPSNNRICDGVRDYAMAIVRERYADFGPTLAAEKLAELDGLTVSRETLRQWMADAGLW
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECHHHHHHHHHHCCHH
LSRKQRRTFHQPRLRREAYGELVQIDGSEHRWFEDRGDPCSLLVFIDDATGKLMQLRFVR
HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEHH
SESAFTYFEALELYLKAHGAPVAFYSDKHSVFRVAKKDAKGGQGMTQFGRALCELNIEIL
CCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEE
CANSSQAKGRVERMNRTLQDRLIKDLRLEGICGMDDGNAFLPRFMERYNRQFAITPARSD
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCC
DLHRPLNLAPDRLRDVLCKREQRYVGAQLTFSFERQRIMLEENEVTRGLVGRYVETHAYA
CCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCEEEECCCHHHHHHHHHHHHHHCCC
DGRLDVRWKGHSLPYRVFDKDQRVTHAAIIENKRLSDVLAYIKERQDERPAPKVRTNSEK
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
NGYTPRGRKPGKRTDFMNDPVVIARRRQALSNLDAAE
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GLIAMSERDLQRIEVLSKVIDGRMTMVSAAHVLGLSTRQVRRLLDRISAGGAASIRHKA
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
IGRPSNNRICDGVRDYAMAIVRERYADFGPTLAAEKLAELDGLTVSRETLRQWMADAGLW
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECHHHHHHHHHHCCHH
LSRKQRRTFHQPRLRREAYGELVQIDGSEHRWFEDRGDPCSLLVFIDDATGKLMQLRFVR
HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEHH
SESAFTYFEALELYLKAHGAPVAFYSDKHSVFRVAKKDAKGGQGMTQFGRALCELNIEIL
CCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEE
CANSSQAKGRVERMNRTLQDRLIKDLRLEGICGMDDGNAFLPRFMERYNRQFAITPARSD
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCC
DLHRPLNLAPDRLRDVLCKREQRYVGAQLTFSFERQRIMLEENEVTRGLVGRYVETHAYA
CCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCEEEECCCHHHHHHHHHHHHHHCCC
DGRLDVRWKGHSLPYRVFDKDQRVTHAAIIENKRLSDVLAYIKERQDERPAPKVRTNSEK
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
NGYTPRGRKPGKRTDFMNDPVVIARRRQALSNLDAAE
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424