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Identifier: 16519652

GI number: 16519652

Start: 42590

End: 43021

Strand: Reverse

Name: Not Available

Synonym: NGR_a00350

Alternate gene names: NA

Gene position: 43021-42590 (Counterclockwise)

Preceding gene: 16519651

Following gene: 16519653

Centisome position: 8.02

GC content: 55.32

Gene sequence:

>432_bases
GTGTTGAGTGTTGACCCTGAGAAGAAAAGAGCCAAAGCGAACGCTGTGGATATTTACGTCGGCCGTCGAATTCGCCAGAG
GCGACGATGGCAGAATATGTCCCAAGCGGCCCTCGGAGAAGCTATCGGGGTGACGTTTCAGCAGGTGCAAAAATATGAAA
AGGGCTCGAACCGGGTAGGTGCGGGCCGACTTCAGCAGATATCTGATGCACTGGAAGTGCACCCTTCCTATTTTTTTGAG
GACATGCCTGACGACACTCAGTCGATAGGGCAGGGCGCCCCTAATCAGGCCTATATCCCGCCCGAAGTGATTGAGTTCGC
TGCAAGCGACGAAGGGGTCGAGCTCATCCGGGCGTTCTCCCGTGTCGGCAATCTCAACGTGCGCTGTCGAATCGTGAAGC
TGCTCAAGTCTCTCGGCGAACACGACTGGTAA

Upstream 100 bases:

>100_bases
GAGTTGAGCTGTATCAAACGGGTGCCCTCGACAAAGGCCATATTCGATATAGCGGATCCCAGTAAATCATTGGTGAAACG
ATCCTTCACCAGGAGTAAGT

Downstream 100 bases:

>100_bases
GCATGAATTCGCCCATTTCTGAGTCGAACGCGGCTACGCTCTCGGAATGAAATCAACCGTAAGTGACATCGCCATGGGAC
GCTTGCATTGACTCTGTAGC

Product: Cro/CI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MLSVDPEKKRAKANAVDIYVGRRIRQRRRWQNMSQAALGEAIGVTFQQVQKYEKGSNRVGAGRLQQISDALEVHPSYFFE
DMPDDTQSIGQGAPNQAYIPPEVIEFAASDEGVELIRAFSRVGNLNVRCRIVKLLKSLGEHDW

Sequences:

>Translated_143_residues
MLSVDPEKKRAKANAVDIYVGRRIRQRRRWQNMSQAALGEAIGVTFQQVQKYEKGSNRVGAGRLQQISDALEVHPSYFFE
DMPDDTQSIGQGAPNQAYIPPEVIEFAASDEGVELIRAFSRVGNLNVRCRIVKLLKSLGEHDW
>Mature_143_residues
MLSVDPEKKRAKANAVDIYVGRRIRQRRRWQNMSQAALGEAIGVTFQQVQKYEKGSNRVGAGRLQQISDALEVHPSYFFE
DMPDDTQSIGQGAPNQAYIPPEVIEFAASDEGVELIRAFSRVGNLNVRCRIVKLLKSLGEHDW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4AM_RHISN (P55360)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443772.1
- ProteinModelPortal:   P55360
- SMR:   P55360
- GeneID:   962181
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00350
- HOGENOM:   HBG730058
- ProtClustDB:   CLSK516071
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 16130; Mature: 16130

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVDPEKKRAKANAVDIYVGRRIRQRRRWQNMSQAALGEAIGVTFQQVQKYEKGSNRVG
CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AGRLQQISDALEVHPSYFFEDMPDDTQSIGQGAPNQAYIPPEVIEFAASDEGVELIRAFS
HHHHHHHHHHHHHCHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHH
RVGNLNVRCRIVKLLKSLGEHDW
HHCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLSVDPEKKRAKANAVDIYVGRRIRQRRRWQNMSQAALGEAIGVTFQQVQKYEKGSNRVG
CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AGRLQQISDALEVHPSYFFEDMPDDTQSIGQGAPNQAYIPPEVIEFAASDEGVELIRAFS
HHHHHHHHHHHHHCHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHH
RVGNLNVRCRIVKLLKSLGEHDW
HHCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424