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The map label for this gene is nodD1

Identifier: 16519651

GI number: 16519651

Start: 43584

End: 44552

Strand: Reverse

Name: nodD1

Synonym: NGR_a00360

Alternate gene names: 16519651

Gene position: 44552-43584 (Counterclockwise)

Preceding gene: 16519650

Following gene: 16519652

Centisome position: 8.31

GC content: 56.97

Gene sequence:

>969_bases
ATGCGTTTTAAGGGCCTTGATCTCAATCTCCTCGTTGCGCTCGACGCACTGATGACCGAACGCAAACTCACGGCCGCTGC
ACGCAGCATCAACCTGAGCCAGCCGGCGATGAGCGCAGCCATCACCCGGCTTCGGACCTATTTCCGCGACGAGCTATTTA
CCATGAATGGTCGCGAACTTGTACCAACTCCGCGAGCAGAAGCGCTCGCACCCGCAGTCCGCGAAGCCCTGCTGCACATC
CATCTCTCCATCATTTCATGGGATCCGTTCAACCCAGCGCAGTCAGATCGCAGTTTCAGGATCATTCTTTCCGACTTCAT
GACGCTAATGTTTCTTGAAAGGGTTGTGGTGAGAGTGGCGCGGGAAGCGCCCGCCGTCAGTTTCGAGTTGCTGCCGTTTT
CCGATGAGCCAGATGAGCTTCTCCGGCGTGGTGATGTCGATTTCCTGATCCTGCCAGAAATGTTCATGTCGCACACGCAT
CCCAGAGCGAAGCTGTTCGATGAGAGATTCGTGTGCGTGAGCTGCCCAACGAACCAGAAGCTACCGCCGCAGCTCTCCAT
CGACAACTATGTATCAATGGGGCATGTTGCGGCCCAATTCGGGAAGCAGCGGCCTTCCGTGGAGGAATGGCTATTGCGCG
AGCACGGATTGCGAAGACGGGTCGAAGTCGCCGTGCCGGGTTTTACCATGATCCCGTCTTTTTTGTCGGGCACTGACCGC
ATAGCGACCCTCCCGTTACGACTGGCGATGCACTTCGCAAAAGCCATTCCCCTGCGGATCACCGAACTTCCGCAACCCAT
TTTTCCCGCGTTCACCGAGGCTGTCCAGTGGCCCGCGCCTCACAGCAGTGATCCGGCCAGTCTCTGGATGCGCGAGATAT
TTCTACAGGAGGCGTCTCGCGTTGAATTTCAATCCGAAACTTCGGCGCATGCTCTATCTAAAGCCGACGGCGCAATTCGC
CACCCTTGA

Upstream 100 bases:

>100_bases
CCGTGAATGCACTTGACTTCAGATTAATTAAGCGTTTTCTAACGATTTGCATAATTGATCGTTCGGATGACAACCATCCG
CACTGTGGATTCGCCAGAAC

Downstream 100 bases:

>100_bases
GCCCGCAACTGCACGGTCGGCTCAGGGTCGAGCAGTTTGGCTGCAGGTTGCGGCCTACCAGAGGGGCTCGCACGGCCCGA
GCGTACCGCATGCCACACTC

Product: LysR family tramscriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MRFKGLDLNLLVALDALMTERKLTAAARSINLSQPAMSAAITRLRTYFRDELFTMNGRELVPTPRAEALAPAVREALLHI
HLSIISWDPFNPAQSDRSFRIILSDFMTLMFLERVVVRVAREAPAVSFELLPFSDEPDELLRRGDVDFLILPEMFMSHTH
PRAKLFDERFVCVSCPTNQKLPPQLSIDNYVSMGHVAAQFGKQRPSVEEWLLREHGLRRRVEVAVPGFTMIPSFLSGTDR
IATLPLRLAMHFAKAIPLRITELPQPIFPAFTEAVQWPAPHSSDPASLWMREIFLQEASRVEFQSETSAHALSKADGAIR
HP

Sequences:

>Translated_322_residues
MRFKGLDLNLLVALDALMTERKLTAAARSINLSQPAMSAAITRLRTYFRDELFTMNGRELVPTPRAEALAPAVREALLHI
HLSIISWDPFNPAQSDRSFRIILSDFMTLMFLERVVVRVAREAPAVSFELLPFSDEPDELLRRGDVDFLILPEMFMSHTH
PRAKLFDERFVCVSCPTNQKLPPQLSIDNYVSMGHVAAQFGKQRPSVEEWLLREHGLRRRVEVAVPGFTMIPSFLSGTDR
IATLPLRLAMHFAKAIPLRITELPQPIFPAFTEAVQWPAPHSSDPASLWMREIFLQEASRVEFQSETSAHALSKADGAIR
HP
>Mature_322_residues
MRFKGLDLNLLVALDALMTERKLTAAARSINLSQPAMSAAITRLRTYFRDELFTMNGRELVPTPRAEALAPAVREALLHI
HLSIISWDPFNPAQSDRSFRIILSDFMTLMFLERVVVRVAREAPAVSFELLPFSDEPDELLRRGDVDFLILPEMFMSHTH
PRAKLFDERFVCVSCPTNQKLPPQLSIDNYVSMGHVAAQFGKQRPSVEEWLLREHGLRRRVEVAVPGFTMIPSFLSGTDR
IATLPLRLAMHFAKAIPLRITELPQPIFPAFTEAVQWPAPHSSDPASLWMREIFLQEASRVEFQSETSAHALSKADGAIR
HP

Specific function: Regulates the expression of the nod abcFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87081684, Length=303, Percent_Identity=26.7326732673267, Blast_Score=101, Evalue=8e-23,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NODD1_RHISN (P55359)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443771.1
- ProteinModelPortal:   P55359
- SMR:   P55359
- GeneID:   962176
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00360
- HOGENOM:   HBG682110
- ProtClustDB:   CLSK864448
- GO:   GO:0009877
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 36461; Mature: 36461

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKGLDLNLLVALDALMTERKLTAAARSINLSQPAMSAAITRLRTYFRDELFTMNGREL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCCEE
VPTPRAEALAPAVREALLHIHLSIISWDPFNPAQSDRSFRIILSDFMTLMFLERVVVRVA
CCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
REAPAVSFELLPFSDEPDELLRRGDVDFLILPEMFMSHTHPRAKLFDERFVCVSCPTNQK
HCCCCCEEEEECCCCCHHHHHHHCCCCEEECCHHHHCCCCCHHHHHCCCEEEEECCCCCC
LPPQLSIDNYVSMGHVAAQFGKQRPSVEEWLLREHGLRRRVEVAVPGFTMIPSFLSGTDR
CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHEEEEECCCHHHHHHHHCCCCH
IATLPLRLAMHFAKAIPLRITELPQPIFPAFTEAVQWPAPHSSDPASLWMREIFLQEASR
HHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
VEFQSETSAHALSKADGAIRHP
HHHHCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRFKGLDLNLLVALDALMTERKLTAAARSINLSQPAMSAAITRLRTYFRDELFTMNGREL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCCEE
VPTPRAEALAPAVREALLHIHLSIISWDPFNPAQSDRSFRIILSDFMTLMFLERVVVRVA
CCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
REAPAVSFELLPFSDEPDELLRRGDVDFLILPEMFMSHTHPRAKLFDERFVCVSCPTNQK
HCCCCCEEEEECCCCCHHHHHHHCCCCEEECCHHHHCCCCCHHHHHCCCEEEEECCCCCC
LPPQLSIDNYVSMGHVAAQFGKQRPSVEEWLLREHGLRRRVEVAVPGFTMIPSFLSGTDR
CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHEEEEECCCHHHHHHHHCCCCH
IATLPLRLAMHFAKAIPLRITELPQPIFPAFTEAVQWPAPHSSDPASLWMREIFLQEASR
HHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
VEFQSETSAHALSKADGAIRHP
HHHHCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424