Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
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Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is hemL
Identifier: 161579526
GI number: 161579526
Start: 533791
End: 535059
Strand: Reverse
Name: hemL
Synonym: MJ0603
Alternate gene names: 161579526
Gene position: 535059-533791 (Counterclockwise)
Preceding gene: 15668784
Following gene: 15668782
Centisome position: 32.14
GC content: 35.93
Gene sequence:
>1269_bases ATGGACAAGTCAAAGGAATTATTTGAAGAGGCTAAAAAATATTTGGTTGGAGGAGTTAATAGTCCAGTTAGATATTTTAA ACCATATCCATTTTTTGTTGAGAAAGCTAAAGATTGCTATTTATTTGATGTTGATGGAAACTGCTATATTGATTACTGCT TAGCTTACGGGCCGATGGTTTTAGGGCATGCAAATGATGCTGTGATTAAAGCAGTTAAAGAGCAACTTGAATTAGGAAGT GCTTATGGATGCCCAACAGAGAAAGAGATTATTTTAGCTAAAGAGGTTGTTAAAAGAGTTCCATGTGCTGAGATGGTTAG ATTTGTTAATTCTGGGACTGAGGCGACGATGTCAGCTATAAGATTGGCAAGAGGAGTTACTGGAAGGAAGAAGATTATTA AGTTTGATGGAGCTTATCATGGAGCTCATGACTATGTTTTGGTTAAGAGTGGAAGTGGTGCTCTAACCCACGGACATCCA AACTCTCCAGGAATCCCAGAAGAGACAACAAAAAATACTATCTTAATTCCGTTTAATGATGAAGATGCTGTAAAAAAAGC AATAAATGAAAATAAAGATGAAATTGCCTGTATTATAGTTGAGCCAATTATGGGAAATGTTGGTTGTATATTACCAAAAG AAGGTTATTTAGAGTTTTTAAGAGAGATAACTGAGGAAAATGATATTTTGTTGATATTTGATGAGGTTATAACTGGGTTT AGATTAGCTAAGGGAGGAGCTCAGGAGTATTTTGGAGTAGTTCCAGATATAGCTACCTTAGGAAAGATATTGGGAGGAGG ATTTCCAATCGGTGCTATTGTGGGGAGAAGAGAGCTTATGGAGCAGTTTTCTCCATTGGGAGCTATATATCAAGCAGGAA CATTCAACGGAAATCCAATATCAATAACTGCTGGAATCGCCACTCTTAAGCAGTTGGATGATAGGTTTTATAAAGAAACA GCAAGAACTGCTAAGATATTGGCAGATACTTTAAGAGAGTTGGCTGATAAACATAATATTAAAGCTAAGGTTTATAACAT TGCTTCAATGTTCCAAATCTACTTCAATGATAAGGAAGTTGTGAATTATGAGATTGCCAAGCAGAGTGATACTGAGAAAT TTATGAAATACTTCTGGAGATTGTTGGAGAAAGGGGTTTTTGTTCCTCCTTCACAGTTTGAATGTTGCTTTACCTCAATA AAACATGATGATGAGGTTGTTGATAAGACAATAAAGGCTATGGAGGATGTGTTTGAGGGTTTAGAATAA
Upstream 100 bases:
>100_bases AAGGAAGAGTGTTGTATTAAGAATAAAATCGATGGTTAATTCCTCTCCATTATGGAAGAAGTTAATGAGAAAATGTAAAG GTGAAAATATGGCCTTAAAA
Downstream 100 bases:
>100_bases TTTTAACTTATTTTTATAATTTTCTCTTAAGGGATTCAAATGCTGTTAGAAAAAAGCAAAATAGAGATTATTGAGCAATT TATACATATTTTAGAAATTT
Product: glutamate-1-semialdehyde aminotransferase
Products: NA
Alternate protein names: GSA; Glutamate-1-semialdehyde aminotransferase; GSA-AT
Number of amino acids: Translated: 422; Mature: 422
Protein sequence:
>422_residues MDKSKELFEEAKKYLVGGVNSPVRYFKPYPFFVEKAKDCYLFDVDGNCYIDYCLAYGPMVLGHANDAVIKAVKEQLELGS AYGCPTEKEIILAKEVVKRVPCAEMVRFVNSGTEATMSAIRLARGVTGRKKIIKFDGAYHGAHDYVLVKSGSGALTHGHP NSPGIPEETTKNTILIPFNDEDAVKKAINENKDEIACIIVEPIMGNVGCILPKEGYLEFLREITEENDILLIFDEVITGF RLAKGGAQEYFGVVPDIATLGKILGGGFPIGAIVGRRELMEQFSPLGAIYQAGTFNGNPISITAGIATLKQLDDRFYKET ARTAKILADTLRELADKHNIKAKVYNIASMFQIYFNDKEVVNYEIAKQSDTEKFMKYFWRLLEKGVFVPPSQFECCFTSI KHDDEVVDKTIKAMEDVFEGLE
Sequences:
>Translated_422_residues MDKSKELFEEAKKYLVGGVNSPVRYFKPYPFFVEKAKDCYLFDVDGNCYIDYCLAYGPMVLGHANDAVIKAVKEQLELGS AYGCPTEKEIILAKEVVKRVPCAEMVRFVNSGTEATMSAIRLARGVTGRKKIIKFDGAYHGAHDYVLVKSGSGALTHGHP NSPGIPEETTKNTILIPFNDEDAVKKAINENKDEIACIIVEPIMGNVGCILPKEGYLEFLREITEENDILLIFDEVITGF RLAKGGAQEYFGVVPDIATLGKILGGGFPIGAIVGRRELMEQFSPLGAIYQAGTFNGNPISITAGIATLKQLDDRFYKET ARTAKILADTLRELADKHNIKAKVYNIASMFQIYFNDKEVVNYEIAKQSDTEKFMKYFWRLLEKGVFVPPSQFECCFTSI KHDDEVVDKTIKAMEDVFEGLE >Mature_422_residues MDKSKELFEEAKKYLVGGVNSPVRYFKPYPFFVEKAKDCYLFDVDGNCYIDYCLAYGPMVLGHANDAVIKAVKEQLELGS AYGCPTEKEIILAKEVVKRVPCAEMVRFVNSGTEATMSAIRLARGVTGRKKIIKFDGAYHGAHDYVLVKSGSGALTHGHP NSPGIPEETTKNTILIPFNDEDAVKKAINENKDEIACIIVEPIMGNVGCILPKEGYLEFLREITEENDILLIFDEVITGF RLAKGGAQEYFGVVPDIATLGKILGGGFPIGAIVGRRELMEQFSPLGAIYQAGTFNGNPISITAGIATLKQLDDRFYKET ARTAKILADTLRELADKHNIKAKVYNIASMFQIYFNDKEVVNYEIAKQSDTEKFMKYFWRLLEKGVFVPPSQFECCFTSI KHDDEVVDKTIKAMEDVFEGLE
Specific function: Porphyrin biosynthesis by the C5 pathway; second step. [C]
COG id: COG0001
COG function: function code H; Glutamate-1-semialdehyde aminotransferase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily
Homologues:
Organism=Homo sapiens, GI4557809, Length=431, Percent_Identity=26.4501160092807, Blast_Score=125, Evalue=6e-29, Organism=Homo sapiens, GI37574042, Length=384, Percent_Identity=28.125, Blast_Score=116, Evalue=5e-26, Organism=Homo sapiens, GI226442705, Length=384, Percent_Identity=27.0833333333333, Blast_Score=109, Evalue=5e-24, Organism=Homo sapiens, GI226442709, Length=348, Percent_Identity=27.8735632183908, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI24119277, Length=393, Percent_Identity=26.4631043256997, Blast_Score=102, Evalue=7e-22, Organism=Homo sapiens, GI284507298, Length=325, Percent_Identity=27.0769230769231, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI13994255, Length=341, Percent_Identity=27.5659824046921, Blast_Score=94, Evalue=3e-19, Organism=Escherichia coli, GI1786349, Length=426, Percent_Identity=49.2957746478873, Blast_Score=410, Evalue=1e-115, Organism=Escherichia coli, GI1789016, Length=367, Percent_Identity=29.9727520435967, Blast_Score=152, Evalue=5e-38, Organism=Escherichia coli, GI145693181, Length=335, Percent_Identity=32.5373134328358, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI1789759, Length=287, Percent_Identity=31.7073170731707, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1787560, Length=394, Percent_Identity=28.4263959390863, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1788044, Length=285, Percent_Identity=30.5263157894737, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1786991, Length=294, Percent_Identity=28.2312925170068, Blast_Score=81, Evalue=1e-16, Organism=Caenorhabditis elegans, GI25144271, Length=347, Percent_Identity=28.5302593659942, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI71992977, Length=365, Percent_Identity=27.3972602739726, Blast_Score=111, Evalue=8e-25, Organism=Caenorhabditis elegans, GI25144274, Length=162, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6324432, Length=334, Percent_Identity=28.7425149700599, Blast_Score=107, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6323470, Length=358, Percent_Identity=26.2569832402235, Blast_Score=106, Evalue=7e-24, Organism=Drosophila melanogaster, GI21357415, Length=323, Percent_Identity=29.1021671826625, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI161085790, Length=359, Percent_Identity=26.4623955431755, Blast_Score=92, Evalue=7e-19, Organism=Drosophila melanogaster, GI28574759, Length=359, Percent_Identity=26.4623955431755, Blast_Score=91, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GSA_METJA (Q58020)
Other databases:
- EMBL: L77117 - PIR: C64375 - RefSeq: NP_247585.2 - ProteinModelPortal: Q58020 - SMR: Q58020 - GeneID: 1451468 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0603 - NMPDR: fig|243232.1.peg.622 - TIGR: MJ0603 - HOGENOM: HBG725944 - OMA: SFISSVH - ProtClustDB: PRK00062 - BioCyc: MJAN243232:MJ_0603-MONOMER - BRENDA: 5.4.3.8 - GO: GO:0005737 - HAMAP: MF_00375 - InterPro: IPR004639 - InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 - Gene3D: G3DSA:3.40.640.10 - Gene3D: G3DSA:3.90.1150.10 - PANTHER: PTHR11986 - TIGRFAMs: TIGR00713
Pfam domain/function: PF00202 Aminotran_3; SSF53383 PyrdxlP-dep_Trfase_major
EC number: =5.4.3.8
Molecular weight: Translated: 47008; Mature: 47008
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKSKELFEEAKKYLVGGVNSPVRYFKPYPFFVEKAKDCYLFDVDGNCYIDYCLAYGPMV CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCCEEEEECCCCEEEHHHHHHCCEE LGHANDAVIKAVKEQLELGSAYGCPTEKEIILAKEVVKRVPCAEMVRFVNSGTEATMSAI EECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH RLARGVTGRKKIIKFDGAYHGAHDYVLVKSGSGALTHGHPNSPGIPEETTKNTILIPFND HHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEEEECC EDAVKKAINENKDEIACIIVEPIMGNVGCILPKEGYLEFLREITEENDILLIFDEVITGF HHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCHHHHHHHHHHCCCCCEEEEEHHHHHHH RLAKGGAQEYFGVVPDIATLGKILGGGFPIGAIVGRRELMEQFSPLGAIYQAGTFNGNPI HHCCCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCE SITAGIATLKQLDDRFYKETARTAKILADTLRELADKHNIKAKVYNIASMFQIYFNDKEV EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE VNYEIAKQSDTEKFMKYFWRLLEKGVFVPPSQFECCFTSIKHDDEVVDKTIKAMEDVFEG EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC LE CC >Mature Secondary Structure MDKSKELFEEAKKYLVGGVNSPVRYFKPYPFFVEKAKDCYLFDVDGNCYIDYCLAYGPMV CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCCEEEEECCCCEEEHHHHHHCCEE LGHANDAVIKAVKEQLELGSAYGCPTEKEIILAKEVVKRVPCAEMVRFVNSGTEATMSAI EECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH RLARGVTGRKKIIKFDGAYHGAHDYVLVKSGSGALTHGHPNSPGIPEETTKNTILIPFND HHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEEEECC EDAVKKAINENKDEIACIIVEPIMGNVGCILPKEGYLEFLREITEENDILLIFDEVITGF HHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCHHHHHHHHHHCCCCCEEEEEHHHHHHH RLAKGGAQEYFGVVPDIATLGKILGGGFPIGAIVGRRELMEQFSPLGAIYQAGTFNGNPI HHCCCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCE SITAGIATLKQLDDRFYKETARTAKILADTLRELADKHNIKAKVYNIASMFQIYFNDKEV EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE VNYEIAKQSDTEKFMKYFWRLLEKGVFVPPSQFECCFTSIKHDDEVVDKTIKAMEDVFEG EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC LE CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087