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The map label for this gene is 15668774

Identifier: 15668774

GI number: 15668774

Start: 526885

End: 527394

Strand: Direct

Name: 15668774

Synonym: MJ0594

Alternate gene names: NA

Gene position: 526885-527394 (Clockwise)

Preceding gene: 15668773

Following gene: 15668775

Centisome position: 31.65

GC content: 28.24

Gene sequence:

>510_bases
ATGATACTAACAACTTCAAGAAAACCCTCCCAAAGAACAAGAAGTTTTGCGAGAGATTTAGAGAGAACTTTAAATATTCC
CTATGTTCAGAGAGGGAAGCTTTCATTAAAGGAGATTTTTGAAATTGATAAGCATGTTCTTTTAATTGGTGAGTTTAAAG
CTAACCCTGGAACTTTAGTTGTTTATGATGTTGAAAATGAAAAAAGACTATCAAGCTTTATCTCTGTTAAATTACAGAGA
GAGATTTGTGGAGAGAAAATATATAATGATGATGGAATAAGAATAAAAATAAGTAGAGAACTTAAAGATAACGAGGAATT
TCAAAAATACTATGAAATTTATGATGAATTTTTATTCCAACATTTAAATATTAATGAGGATAGTGATATAACATTGAGGT
TGGAAAAAGACCCAAAATATCTATTTGCTATACAATTTTATAAAGGGAGAGTTAAAATAGGGCCTTTGATTAGAATAAAA
TCTATTAAGTTGTTTGACAGCCTTTTATAA

Upstream 100 bases:

>100_bases
CTTGAAGAGCTGGGAAAAAGAGCAAGATGTCCTCACTGCAGTTATAAGATATTGGTTAAACTTAGACCAAAAGTAGTTAA
ACATGTAAAGGCGAGATAAA

Downstream 100 bases:

>100_bases
AGGGATTTTCATGAATTCTTTTGAGTTAATATTGGAGTTTGATAGTGAGGAAGAGGCTGAAATTATCTATAAATCCATAT
TTTTGGAACATTTAACTTCT

Product: ribosomal biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIFEIDKHVLLIGEFKANPGTLVVYDVENEKRLSSFISVKLQR
EICGEKIYNDDGIRIKISRELKDNEEFQKYYEIYDEFLFQHLNINEDSDITLRLEKDPKYLFAIQFYKGRVKIGPLIRIK
SIKLFDSLL

Sequences:

>Translated_169_residues
MILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIFEIDKHVLLIGEFKANPGTLVVYDVENEKRLSSFISVKLQR
EICGEKIYNDDGIRIKISRELKDNEEFQKYYEIYDEFLFQHLNINEDSDITLRLEKDPKYLFAIQFYKGRVKIGPLIRIK
SIKLFDSLL
>Mature_169_residues
MILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIFEIDKHVLLIGEFKANPGTLVVYDVENEKRLSSFISVKLQR
EICGEKIYNDDGIRIKISRELKDNEEFQKYYEIYDEFLFQHLNINEDSDITLRLEKDPKYLFAIQFYKGRVKIGPLIRIK
SIKLFDSLL

Specific function: Probably involved in the biogenesis of the ribosome

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): BRIX_METJA (Q58012)

Other databases:

- EMBL:   L77117
- PIR:   B64374
- RefSeq:   NP_247575.1
- ProteinModelPortal:   Q58012
- GeneID:   1451459
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0594
- NMPDR:   fig|243232.1.peg.612
- TIGR:   MJ0594
- HOGENOM:   HBG541065
- OMA:   MIITTSR
- ProtClustDB:   PRK00933
- BioCyc:   MJAN243232:MJ_0594-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_00699
- InterPro:   IPR004154
- InterPro:   IPR007109
- SMART:   SM00879

Pfam domain/function: PF04427 Brix; SSF52954 Anticodon_bd

EC number: NA

Molecular weight: Translated: 20054; Mature: 20054

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIFEIDKHVLLIGEFKANPGTLV
CEEECCCCCHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHCCCEEEEEEEECCCCCEEE
VYDVENEKRLSSFISVKLQREICGEKIYNDDGIRIKISRELKDNEEFQKYYEIYDEFLFQ
EEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
HLNINEDSDITLRLEKDPKYLFAIQFYKGRVKIGPLIRIKSIKLFDSLL
HCCCCCCCCEEEEEECCCCEEEEEEEECCEEEECCEEEEEEEHHHHHCC
>Mature Secondary Structure
MILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIFEIDKHVLLIGEFKANPGTLV
CEEECCCCCHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHCCCEEEEEEEECCCCCEEE
VYDVENEKRLSSFISVKLQREICGEKIYNDDGIRIKISRELKDNEEFQKYYEIYDEFLFQ
EEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
HLNINEDSDITLRLEKDPKYLFAIQFYKGRVKIGPLIRIKSIKLFDSLL
HCCCCCCCCEEEEEECCCCEEEEEEEECCEEEECCEEEEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087