Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
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Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is truD1 [H]
Identifier: 15668768
GI number: 15668768
Start: 520114
End: 521406
Strand: Reverse
Name: truD1 [H]
Synonym: MJ0588
Alternate gene names: 15668768
Gene position: 521406-520114 (Counterclockwise)
Preceding gene: 15668782
Following gene: 15668767
Centisome position: 31.32
GC content: 32.33
Gene sequence:
>1293_bases ATGTATTTTTTGATTCAGCAGAGAAAGGAAGAAAGTGAAAAAAATTTGAAAGAAAAATTAAAAAGATATAGAAAAAAATT AAGAGACAGCAGAATTAAAGAAAAGCTAAAAGAAATGCCATTAAACATGAATAAATACTTAACTGATGCTTATACAGGAG GAATTATTAAAAAATATCCAGAGGATTTTATTGTTGAAGAGATAACTCCAGAAGGAATTATTTTAGAAGTTGGAAAGAGT ATAGAATTTAAAGATGAAGAAAATTGGAAGGGAAATTATATACACTTCACATTAGAGAAGAGGAATTGGACAACTTTAGA TGCCATTAGAGAAATAGCAAACAGAGTAGGAAAGCAGAGAAAGCATTTTGGATTTGCTGGCAATAAGGATAAATATGCCG TAACTACTCAAAGAGTGGGCTGTTTTAATGTAAAGTTAGAAGATTTAATGAAAGTTAAGATTAAAGGCATAATATTGAGA GATTTCCAAAAAACAAATAGAAAAATAAGGTTGGGGGATTTGTGGGGGAATAGATTTACTATAAGAGTTAGAGAGCCTGA GCTTAAAGGAAAAGAATTGGAAGAAGCTTTAAATAAGTTATGTAAGCTAAAATACTTCTTAAATTACTATGGTGTTCAAA GGTTTGGAACTACAAGGCCAATAACTCACATAGTTGGGAGGTTTATTATAGAGAGAGACTGGGAGGGAGCTTTCCATGCA TATTGTGGAACTCCCCTTCCTTACGATGACAAAAAATCAAAGTTGGCAAGGGAGTTGGTGGATGAAGAGAATTTTAAAGA GGCGTATAAAAAATTCCCAAAGGCTTTCTTTTATGAAAGAAGGATGATTAAAGCTTATATAGAAACTGGGAGCTATCAAA AGGCATTTATGATTCTTCCACCATACTTAAGGTGCATGTTTATAAATGCTTATCAATCCTATTTATTCAATGAGATAATC AATAGAAGGTTTGAGTATGGCTTTGAACCTATGGAAGGGGATATTTTAATTGATAATGTGCCGAGTGGGGCATTGTTTGG ATATAAAACAAGGTTTGCATCTGGAATACAAGGAGAGATTGAGAGAGAGATTTATGAGAGAGAAAATCTAAGTCCAGAGG ATTTCAAGATTGGTGAGTTTGGTTCATTTATTGGAGATAGAAGGGCGATGATTGGAAAAATATACAATATGAAATATTGG ATTGAAGATGACAGCTATGTTTTGCAGTTTTGTTTAAAAAAAGGAAATTATGCAACCTCTGTTTTGAGGGAGTTTATAGA AAAGAAGGATTAA
Upstream 100 bases:
>100_bases TTTTGCTATCTCTAACAACTCTCTCCAGACCTCTTTAGGTCTCACACTATCACCAAATTAAGATTTAACTAATTACTATT AAAGTATTGTAGGTGATTAT
Downstream 100 bases:
>100_bases AAGATTCAGTAAGAAGTTTTAGGAAAATAATAAAAATAATAAAAGGAAAAATTATTGTGGGATTTAAATATCTCTTAAAA AATTAGGAAAATAAAAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: tRNA pseudouridylate synthase D 1; tRNA-uridine isomerase D 1 [H]
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MYFLIQQRKEESEKNLKEKLKRYRKKLRDSRIKEKLKEMPLNMNKYLTDAYTGGIIKKYPEDFIVEEITPEGIILEVGKS IEFKDEENWKGNYIHFTLEKRNWTTLDAIREIANRVGKQRKHFGFAGNKDKYAVTTQRVGCFNVKLEDLMKVKIKGIILR DFQKTNRKIRLGDLWGNRFTIRVREPELKGKELEEALNKLCKLKYFLNYYGVQRFGTTRPITHIVGRFIIERDWEGAFHA YCGTPLPYDDKKSKLARELVDEENFKEAYKKFPKAFFYERRMIKAYIETGSYQKAFMILPPYLRCMFINAYQSYLFNEII NRRFEYGFEPMEGDILIDNVPSGALFGYKTRFASGIQGEIEREIYERENLSPEDFKIGEFGSFIGDRRAMIGKIYNMKYW IEDDSYVLQFCLKKGNYATSVLREFIEKKD
Sequences:
>Translated_430_residues MYFLIQQRKEESEKNLKEKLKRYRKKLRDSRIKEKLKEMPLNMNKYLTDAYTGGIIKKYPEDFIVEEITPEGIILEVGKS IEFKDEENWKGNYIHFTLEKRNWTTLDAIREIANRVGKQRKHFGFAGNKDKYAVTTQRVGCFNVKLEDLMKVKIKGIILR DFQKTNRKIRLGDLWGNRFTIRVREPELKGKELEEALNKLCKLKYFLNYYGVQRFGTTRPITHIVGRFIIERDWEGAFHA YCGTPLPYDDKKSKLARELVDEENFKEAYKKFPKAFFYERRMIKAYIETGSYQKAFMILPPYLRCMFINAYQSYLFNEII NRRFEYGFEPMEGDILIDNVPSGALFGYKTRFASGIQGEIEREIYERENLSPEDFKIGEFGSFIGDRRAMIGKIYNMKYW IEDDSYVLQFCLKKGNYATSVLREFIEKKD >Mature_430_residues MYFLIQQRKEESEKNLKEKLKRYRKKLRDSRIKEKLKEMPLNMNKYLTDAYTGGIIKKYPEDFIVEEITPEGIILEVGKS IEFKDEENWKGNYIHFTLEKRNWTTLDAIREIANRVGKQRKHFGFAGNKDKYAVTTQRVGCFNVKLEDLMKVKIKGIILR DFQKTNRKIRLGDLWGNRFTIRVREPELKGKELEEALNKLCKLKYFLNYYGVQRFGTTRPITHIVGRFIIERDWEGAFHA YCGTPLPYDDKKSKLARELVDEENFKEAYKKFPKAFFYERRMIKAYIETGSYQKAFMILPPYLRCMFINAYQSYLFNEII NRRFEYGFEPMEGDILIDNVPSGALFGYKTRFASGIQGEIEREIYERENLSPEDFKIGEFGSFIGDRRAMIGKIYNMKYW IEDDSYVLQFCLKKGNYATSVLREFIEKKD
Specific function: Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs [H]
COG id: COG0585
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TRUD domain [H]
Homologues:
Organism=Homo sapiens, GI50727002, Length=255, Percent_Identity=30.5882352941176, Blast_Score=125, Evalue=7e-29, Organism=Homo sapiens, GI148762985, Length=400, Percent_Identity=25.5, Blast_Score=96, Evalue=6e-20, Organism=Homo sapiens, GI148762961, Length=400, Percent_Identity=25.5, Blast_Score=96, Evalue=6e-20, Organism=Homo sapiens, GI148762948, Length=400, Percent_Identity=25.5, Blast_Score=96, Evalue=6e-20, Organism=Escherichia coli, GI1789102, Length=166, Percent_Identity=31.3253012048193, Blast_Score=69, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17557232, Length=319, Percent_Identity=26.3322884012539, Blast_Score=102, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6324817, Length=299, Percent_Identity=32.1070234113712, Blast_Score=136, Evalue=6e-33, Organism=Drosophila melanogaster, GI21355799, Length=260, Percent_Identity=28.4615384615385, Blast_Score=96, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020103 - InterPro: IPR001656 - InterPro: IPR011760 [H]
Pfam domain/function: PF01142 TruD [H]
EC number: NA
Molecular weight: Translated: 51215; Mature: 51215
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: PS50984 TRUD ; PS01268 UPF0024
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYFLIQQRKEESEKNLKEKLKRYRKKLRDSRIKEKLKEMPLNMNKYLTDAYTGGIIKKYP CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCC EDFIVEEITPEGIILEVGKSIEFKDEENWKGNYIHFTLEKRNWTTLDAIREIANRVGKQR HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH KHFGFAGNKDKYAVTTQRVGCFNVKLEDLMKVKIKGIILRDFQKTNRKIRLGDLWGNRFT HHCCCCCCCCCEEEEECCCCEEECCHHHHHHHHHHHHHEECHHHCCCEEEEEEECCCEEE IRVREPELKGKELEEALNKLCKLKYFLNYYGVQRFGTTRPITHIVGRFIIERDWEGAFHA EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHH YCGTPLPYDDKKSKLARELVDEENFKEAYKKFPKAFFYERRMIKAYIETGSYQKAFMILP HCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC PYLRCMFINAYQSYLFNEIINRRFEYGFEPMEGDILIDNVPSGALFGYKTRFASGIQGEI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEECHHHHHHCCCHHHH EREIYERENLSPEDFKIGEFGSFIGDRRAMIGKIYNMKYWIEDDSYVLQFCLKKGNYATS HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCHHHH VLREFIEKKD HHHHHHHCCC >Mature Secondary Structure MYFLIQQRKEESEKNLKEKLKRYRKKLRDSRIKEKLKEMPLNMNKYLTDAYTGGIIKKYP CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCC EDFIVEEITPEGIILEVGKSIEFKDEENWKGNYIHFTLEKRNWTTLDAIREIANRVGKQR HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH KHFGFAGNKDKYAVTTQRVGCFNVKLEDLMKVKIKGIILRDFQKTNRKIRLGDLWGNRFT HHCCCCCCCCCEEEEECCCCEEECCHHHHHHHHHHHHHEECHHHCCCEEEEEEECCCEEE IRVREPELKGKELEEALNKLCKLKYFLNYYGVQRFGTTRPITHIVGRFIIERDWEGAFHA EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHH YCGTPLPYDDKKSKLARELVDEENFKEAYKKFPKAFFYERRMIKAYIETGSYQKAFMILP HCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC PYLRCMFINAYQSYLFNEIINRRFEYGFEPMEGDILIDNVPSGALFGYKTRFASGIQGEI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEECHHHHHHCCCHHHH EREIYERENLSPEDFKIGEFGSFIGDRRAMIGKIYNMKYWIEDDSYVLQFCLKKGNYATS HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCHHHH VLREFIEKKD HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]