Definition Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome.
Accession NC_000909
Length 1,664,970

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The map label for this gene is 15668740

Identifier: 15668740

GI number: 15668740

Start: 494887

End: 495303

Strand: Reverse

Name: 15668740

Synonym: MJ0560

Alternate gene names: NA

Gene position: 495303-494887 (Counterclockwise)

Preceding gene: 15668742

Following gene: 15668738

Centisome position: 29.75

GC content: 28.78

Gene sequence:

>417_bases
GTGATGATAATGAAATTTGTTAGATTAGAATTTATATCTTATGAGGAGTCATATGATTTTGAATTTATGGCTCCGGATGA
CATCACTGAAGATAAGTTTATAGATGACTTGTCAGATGCTATAGTGAAAAGCATAAATTGGGAGTATATAAAGGGATACT
TTCAAGAAGAAGATGAATTAGGTATGGAAATTCTCCCTAATTTAATAGACTGCATTGATTTTAAAAATGTGAATGTAGAA
ATGGAAAAGAAAGGGTATAAACCCATAAAATATGACATCATTGTGTATGCAGGGGCATGGTCATATTTTAATCCAAAAAA
GTTAAGTATTATCGACTTTCATGAAACAGGAGAATTGACAAAATTAGAAAAAGCAATTCAAGAGAAATTAAAAAGATTAA
AGACAGATATTTATTAA

Upstream 100 bases:

>100_bases
AGATTTTATTAGTTTTGAAAAGAACCATATAATTTCACAAAATGATAAATAATTTAAACCTTCAAATAATAAACCATAAC
AACCCCCCAGTGAAAATGAA

Downstream 100 bases:

>100_bases
ATTATGTTTCAAACTACATCTCACAAAGAATCTTCCCATATTTTTCCTTAAATTCATCTAAATTCTTGATAGTTGTATCT
AAAGTTAGAGGAGTTATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MMIMKFVRLEFISYEESYDFEFMAPDDITEDKFIDDLSDAIVKSINWEYIKGYFQEEDELGMEILPNLIDCIDFKNVNVE
MEKKGYKPIKYDIIVYAGAWSYFNPKKLSIIDFHETGELTKLEKAIQEKLKRLKTDIY

Sequences:

>Translated_138_residues
MMIMKFVRLEFISYEESYDFEFMAPDDITEDKFIDDLSDAIVKSINWEYIKGYFQEEDELGMEILPNLIDCIDFKNVNVE
MEKKGYKPIKYDIIVYAGAWSYFNPKKLSIIDFHETGELTKLEKAIQEKLKRLKTDIY
>Mature_138_residues
MMIMKFVRLEFISYEESYDFEFMAPDDITEDKFIDDLSDAIVKSINWEYIKGYFQEEDELGMEILPNLIDCIDFKNVNVE
MEKKGYKPIKYDIIVYAGAWSYFNPKKLSIIDFHETGELTKLEKAIQEKLKRLKTDIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y560_METJA (Q57980)

Other databases:

- EMBL:   L77117
- PIR:   H64369
- RefSeq:   NP_247539.1
- GeneID:   1451425
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0560
- NMPDR:   fig|243232.1.peg.576
- TIGR:   MJ0560
- ProtClustDB:   CLSK2749893
- BioCyc:   MJAN243232:MJ_0560-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16470; Mature: 16470

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIMKFVRLEFISYEESYDFEFMAPDDITEDKFIDDLSDAIVKSINWEYIKGYFQEEDEL
CHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
GMEILPNLIDCIDFKNVNVEMEKKGYKPIKYDIIVYAGAWSYFNPKKLSIIDFHETGELT
CHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCHH
KLEKAIQEKLKRLKTDIY
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMIMKFVRLEFISYEESYDFEFMAPDDITEDKFIDDLSDAIVKSINWEYIKGYFQEEDEL
CHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
GMEILPNLIDCIDFKNVNVEMEKKGYKPIKYDIIVYAGAWSYFNPKKLSIIDFHETGELT
CHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCHH
KLEKAIQEKLKRLKTDIY
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087