Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
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Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is cbiJ
Identifier: 15668732
GI number: 15668732
Start: 487940
End: 488689
Strand: Reverse
Name: cbiJ
Synonym: MJ0552
Alternate gene names: 15668732
Gene position: 488689-487940 (Counterclockwise)
Preceding gene: 15668733
Following gene: 15668731
Centisome position: 29.35
GC content: 30.67
Gene sequence:
>750_bases ATGAACCTACTGTTAATGGGAGGAACTAAGGATAGTGTTGAAATTGGTAAAAAGCTTAGGGATTTGGGAGATTTATTTAT TTTATACACTTCAACAACTGATTATGGTGGAAAATTAGGGGAGGAATTTGCCAACAAAGTGATAACAAAACCTTTAGATA AAAATGAGTTGAAAGAGGTTATAAAGAAATATAATATAGATATTTTAGTCGATGCCACTCATCCATTTGCAATAAATGCA AGCAAAAATGCCATTGAAGTTTGTAAAGAGCTTAATATAAAGTATGTAAGATTTGAGAGAAAAGAGGAAAAGATAAATCA TCCAAATATAATATATGTTAAAGATTTTGAAGAAGCTGCAAGATTGGCTAAAAAAGCAAATAAAGTCTTTCACATGGCAG GAATTAAGAATTTAAAGATGGTTGTTGATATTGTTGGGAAAGATAAGGTTATAGCAAGAGTTCTCCCTATATCTGTAAGT GAGGCATTAAAGATTTTACCTCAAAAGCAGATTGTAGCTATGTATGGGACTTTTTCTAAGGAGCTTAACAAATATTTAAT AAGGGATTATAACTGTGATGTGATAATAACTAAAGATAGTGGGGAGAGTGGGGGTTTTAAAGAGAAAGTTTATGGGGCTT TAGAAGCTGAAGCCAAGGTTATAGTTGTTGAAAGACCTAAAATTGATTATCCAGTTTGTTTTGATGATATAGATGAGCTT ATAAAATACATAGCTAATTTAAAAATTTAA
Upstream 100 bases:
>100_bases CGAAATTTTTTATTGTAAAATGTCAAAAGAATAAAAGATTTACAATTAAGAGATTTTTTGACTTTTTGAGCATATACAAA AGTCTATTTATGGTGAAGTC
Downstream 100 bases:
>100_bases TTTTATAATTTTGGTGAAAAGGATGCACTGCAATATAAACTTAAAATATGGCGTTATAATGAAAAAAGATTGTTATACAT TAAGAATCTCATTAAAACCC
Product: cobalamin biosynthesis protein CbiJ
Products: Precorrin 6A; NADPH; H+
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MNLLLMGGTKDSVEIGKKLRDLGDLFILYTSTTDYGGKLGEEFANKVITKPLDKNELKEVIKKYNIDILVDATHPFAINA SKNAIEVCKELNIKYVRFERKEEKINHPNIIYVKDFEEAARLAKKANKVFHMAGIKNLKMVVDIVGKDKVIARVLPISVS EALKILPQKQIVAMYGTFSKELNKYLIRDYNCDVIITKDSGESGGFKEKVYGALEAEAKVIVVERPKIDYPVCFDDIDEL IKYIANLKI
Sequences:
>Translated_249_residues MNLLLMGGTKDSVEIGKKLRDLGDLFILYTSTTDYGGKLGEEFANKVITKPLDKNELKEVIKKYNIDILVDATHPFAINA SKNAIEVCKELNIKYVRFERKEEKINHPNIIYVKDFEEAARLAKKANKVFHMAGIKNLKMVVDIVGKDKVIARVLPISVS EALKILPQKQIVAMYGTFSKELNKYLIRDYNCDVIITKDSGESGGFKEKVYGALEAEAKVIVVERPKIDYPVCFDDIDEL IKYIANLKI >Mature_249_residues MNLLLMGGTKDSVEIGKKLRDLGDLFILYTSTTDYGGKLGEEFANKVITKPLDKNELKEVIKKYNIDILVDATHPFAINA SKNAIEVCKELNIKYVRFERKEEKINHPNIIYVKDFEEAARLAKKANKVFHMAGIKNLKMVVDIVGKDKVIARVLPISVS EALKILPQKQIVAMYGTFSKELNKYLIRDYNCDVIITKDSGESGGFKEKVYGALEAEAKVIVVERPKIDYPVCFDDIDEL IKYIANLKI
Specific function: Catalyzes the reduction of the macrocycle of cobalt- precorrin-6X into cobalt-precorrin-6Y
COG id: COG2099
COG function: function code H; Precorrin-6x reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the precorrin-6x reductase family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): CBIJ_METJA (Q57972)
Other databases:
- EMBL: L77117 - PIR: H64368 - RefSeq: NP_247531.1 - ProteinModelPortal: Q57972 - GeneID: 1451417 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0552 - NMPDR: fig|243232.1.peg.568 - TIGR: MJ0552 - HOGENOM: HBG711334 - OMA: PYIRFER - ProtClustDB: CLSK876245 - BioCyc: MJAN243232:MJ_0552-MONOMER - InterPro: IPR003723 - TIGRFAMs: TIGR00715
Pfam domain/function: PF02571 CbiJ
EC number: 1.3.1.54
Molecular weight: Translated: 28177; Mature: 28177
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: PS51014 COBK_CBIJ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLLLMGGTKDSVEIGKKLRDLGDLFILYTSTTDYGGKLGEEFANKVITKPLDKNELKEV CEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHH IKKYNIDILVDATHPFAINASKNAIEVCKELNIKYVRFERKEEKINHPNIIYVKDFEEAA HHHCCCEEEEECCCCEEEECCCHHHHHHHHCCCEEEEEECHHHHCCCCCEEEEECHHHHH RLAKKANKVFHMAGIKNLKMVVDIVGKDKVIARVLPISVSEALKILPQKQIVAMYGTFSK HHHHHHHHEEECCCCCCCEEEEEECCCCCEEHHHHCCCHHHHHHHCCHHHHHHHHHHHHH ELNKYLIRDYNCDVIITKDSGESGGFKEKVYGALEAEAKVIVVERPKIDYPVCFDDIDEL HHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHH IKYIANLKI HHHHHCCCC >Mature Secondary Structure MNLLLMGGTKDSVEIGKKLRDLGDLFILYTSTTDYGGKLGEEFANKVITKPLDKNELKEV CEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHH IKKYNIDILVDATHPFAINASKNAIEVCKELNIKYVRFERKEEKINHPNIIYVKDFEEAA HHHCCCEEEEECCCCEEEECCCHHHHHHHHCCCEEEEEECHHHHCCCCCEEEEECHHHHH RLAKKANKVFHMAGIKNLKMVVDIVGKDKVIARVLPISVSEALKILPQKQIVAMYGTFSK HHHHHHHHEEECCCCCCCEEEEEECCCCCEEHHHHCCCHHHHHHHCCHHHHHHHHHHHHH ELNKYLIRDYNCDVIITKDSGESGGFKEKVYGALEAEAKVIVVERPKIDYPVCFDDIDEL HHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHH IKYIANLKI HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Precorrin 6B; NADP+
Specific reaction: precorrin-6B + NADP+ = precorrin-6A + NADPH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087