Click here to switch to the map view.

The map label for this gene is oppA

Identifier: 16273049

GI number: 16273049

Start: 1190309

End: 1191934

Strand: Reverse

Name: oppA

Synonym: HI1124

Alternate gene names: 16273049

Gene position: 1191934-1190309 (Counterclockwise)

Preceding gene: 30995425

Following gene: 16273048

Centisome position: 65.13

GC content: 40.51

Gene sequence:

>1626_bases
ATGCAACACAAACTACTCTTCTCTGCAATCGCTCTTGCCCTTTCCTATTCTGCGCAAGCAGTTATAGTGCCTGAAGGAAC
ACAATTAGATGAAAAACAACATATCGTCATCAATAACGGGGCTGAACCGCAAAGTTTTGACCCACACAAAACCGAAGGTG
TGCCAGAATCTAACGTTGCTTATCAATTACTTGAAGGCTTAGTCACCTCAGACTCTGAAGGTAAACTTCAACCGGGTGCG
GCTGAAAGCTGGGAAAATACACCTGACTTCAAAACCTGGACATTCCATTTACGTAAAGATGCTAAATGGTCAAACGGAGA
TCCTGTTACTGCACACGATTTCGTGTTTGCGTGGCGTCGTTTAGTGGATCCTGCAACTGCTGCACCTTACGCGAGTTACC
TAAGTTATTTACAAGTTGAAAATGCACAAGACATTATTGACGGTAAGAAAAAACCGGCTGAATTAGGCGTGGAASCAAAA
GATGATTACACCTTTGTGGTTCATACAACCAATCCTGTGCCTTATACAGTCAGTTTMMCGACTCACCAATCCTTATTGCC
ATTACCANAAAAAGTAGTCGAAAAATTGGGTGATGCATGGGTGAAAAAAGAAAACTACGTGGGTAACGGTGCGTATAAGC
TGGCTAACCACATCATTAACGAAAAAATCGAATTTGAACGTAACCCACTTTATTGGAACGATAAAGAAACCGTAATCAAT
AGCGCGACATTCCTCGCCATTGAAAACCCAAGTACCGATGTAGCGCGTTATCGTGCGGGCGATTTAGACATGACCAGTTA
TGGTTTACCGCCAGAACAATTCGCTAAATTACAAAAAGAATTGCCAGGCGAAGTATACGTTACTCGTACCCTAGGAACTT
ATTCTTATGAATTAAACAATAAGAAAGCACCTTTTGATAACGTGAATATTCGTAAAGCCTTGAACTTATCCCTTGATCGT
AATGTGATCACCGATAAAGTATTGGGTCAAGGTCAAACACCAACCTATGTGTTTACCCCAACTTACATCGAAGAAGGTCA
TCTCATTCAACAACCTGCTTATTCAAAAGAACCGATGGCACAACGTAATGAAGAAGCCATTAAACTCTTAGAAGAAGCTG
GTTACAGTAAAGCGAATCCGTTGAAATTCAGCATTCTTTATAATACCAATGAAAACCACAAAAAAGTGGCTATTGCTGCA
GCATCTATGTGGAAAGCTAACACCAAAGGTTTGATTGACGTGAAATTAGAAAACCAAGAGTGGAAAACTTACATTGATAG
CCGTCGTGCAGGTCGTTACGATGTGGCGCGTGCTGGATGGAATGCGGATTACAACCAAGCAACAACATTCGGCAACTATT
TCTTATCTAATTCTAGTAACAATACCGCGAAATATGCGAATCCAGAATATGATAAAGCGATGGCAGAATCTTACGCAGCA
ACGGATGCAGAAGGTCGTGCAAAAGCTTATGCGAAAGCCGAAGAAATTCTTGGAAAAGATTACGGTATCGTACCAATCTT
TAACTATGTGAATCCACGCTTAGTGAAACCTTACGTAAAAGGTTATTCAGGCAAAGATCCACAAGATCATATTTACTTAC
GCAATCTTTATATTATTAAACATTAA

Upstream 100 bases:

>100_bases
CTTCAAATAATTTCCTGACAAATCTTTACAAAAATGAATTTTTGAGCTAATAAATAGAAGACTTTTTATAAAAATATCGC
CTAATGACAAGGAGGCTCAA

Downstream 100 bases:

>100_bases
TTCGTTACTCGTATTTAAGTGCGGTTAAAAATCGTCGTATTTTTTGACCGCACTTTTCGCCCATTTTGGTTGGAGTTGTT
ATGCTCAAGTTTATTTTTAA

Product: oligopeptide ABC transporter periplasmic-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVAYQLLEGLVTSDSEGKLQPGA
AESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRRLVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEXK
DDYTFVVHTTNPVPYTVSXXTHQSLLPLPXKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNNKKAPFDNVNIRKALNLSLDR
NVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMAQRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAA
ASMWKANTKGLIDVKLENQEWKTYIDSRRAGRYDVARAGWNADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
TDAEGRAKAYAKAEEILGKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIKH

Sequences:

>Translated_541_residues
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVAYQLLEGLVTSDSEGKLQPGA
AESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRRLVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEXK
DDYTFVVHTTNPVPYTVSXXTHQSLLPLPXKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNNKKAPFDNVNIRKALNLSLDR
NVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMAQRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAA
ASMWKANTKGLIDVKLENQEWKTYIDSRRAGRYDVARAGWNADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
TDAEGRAKAYAKAEEILGKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIKH
>Mature_541_residues
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVAYQLLEGLVTSDSEGKLQPGA
AESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRRLVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEXK
DDYTFVVHTTNPVPYTVSXXTHQSLLPLPXKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNNKKAPFDNVNIRKALNLSLDR
NVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMAQRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAA
ASMWKANTKGLIDVKLENQEWKTYIDSRRAGRYDVARAGWNADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
TDAEGRAKAYAKAEEILGKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIKH

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family

Homologues:

Organism=Escherichia coli, GI1787495, Length=531, Percent_Identity=52.9190207156309, Blast_Score=566, Evalue=1e-162,
Organism=Escherichia coli, GI87081878, Length=546, Percent_Identity=42.6739926739927, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI1789397, Length=536, Percent_Identity=38.9925373134328, Blast_Score=387, Evalue=1e-108,
Organism=Escherichia coli, GI1787762, Length=532, Percent_Identity=26.1278195488722, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1789887, Length=473, Percent_Identity=25.369978858351, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1789966, Length=567, Percent_Identity=23.1040564373898, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787052, Length=510, Percent_Identity=22.7450980392157, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): OPPA_HAEIN (P71370)

Other databases:

- EMBL:   L42023
- RefSeq:   NP_439281.1
- GeneID:   950086
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1124
- NMPDR:   fig|71421.1.peg.1080
- TIGR:   HI_1124
- HOGENOM:   HBG688042
- OMA:   ESWENTP
- ProtClustDB:   CLSK808488
- BioCyc:   HINF71421:HI_1124-MONOMER
- InterPro:   IPR000914

Pfam domain/function: PF00496 SBP_bac_5

EC number: NA

Molecular weight: Translated: 60694; Mature: 60694

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVA
CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
YQLLEGLVTSDSEGKLQPGAAESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRR
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHH
LVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEXKDDYTFVVHTTNPVPYTVSXX
HCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHHCCCEECCCEEEEEECCCCCCEEEECC
THQSLLPLPXKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCCCEECCCHHEEC
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNN
CEEEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECEEEEEECC
KKAPFDNVNIRKALNLSLDRNVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMA
CCCCCCCCCHHEEECCCCCCCHHHHHHHCCCCCCEEEECCCEECCCCEECCCCCCCCCHH
QRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAAASMWKANTKGLIDVKLENQE
HCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEHHHCCCCCCEEEEEECCCH
WKTYIDSRRAGRYDVARAGWNADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
HHHHHHHCCCCCCCHHHCCCCCCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHC
TDAEGRAKAYAKAEEILGKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIK
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCEEEEEEEEEEE
H
C
>Mature Secondary Structure
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVA
CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
YQLLEGLVTSDSEGKLQPGAAESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRR
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHH
LVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEXKDDYTFVVHTTNPVPYTVSXX
HCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHHCCCEECCCEEEEEECCCCCCEEEECC
THQSLLPLPXKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCCCEECCCHHEEC
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNN
CEEEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECEEEEEECC
KKAPFDNVNIRKALNLSLDRNVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMA
CCCCCCCCCHHEEECCCCCCCHHHHHHHCCCCCCEEEECCCEECCCCEECCCCCCCCCHH
QRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAAASMWKANTKGLIDVKLENQE
HCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEHHHCCCCCCEEEEEECCCH
WKTYIDSRRAGRYDVARAGWNADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
HHHHHHHCCCCCCCHHHCCCCCCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHC
TDAEGRAKAYAKAEEILGKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIK
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCEEEEEEEEEEE
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800