Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081040

Identifier: 99081040

GI number: 99081040

Start: 1289858

End: 1290730

Strand: Direct

Name: 99081040

Synonym: TM1040_1199

Alternate gene names: NA

Gene position: 1289858-1290730 (Clockwise)

Preceding gene: 99081039

Following gene: 99081041

Centisome position: 40.3

GC content: 59.45

Gene sequence:

>873_bases
ATGATCCGTTCGCTTCCCGCGCCGCTGCGCCCCGCCGCATTTGTCACTGTCCTGCTCAACGGCCTCTTTGCCGCAGCCTT
TGCTGTTGTGATTGCGCTGCCCTCAAAAACCGAGGCCGCCGATCGTGATCAGGTCAAAGCCTTCCTTGAAATTACCGGTT
TTGATGTGGCGCTTGACAGTATTGCGGAATCGGCAAGCGACGCGCCCAAGATCCTCGGGGCGGATGCGGGGGATTTTGGC
CTGGCTTGGGAAAGCCTGACGGCTGAAGTATTTGACACCCAGAAGATGCGCGATACCGCGCTTGATATTCTTGAGCAAAC
CCTCTCTGCCGAGGCACTTTTCTTTGCCGCCGAGTTCTATGCGAGTGACCTTGGACAACGGCTGGTAGCGGTGGAGAACG
CGTCTCACATGAACGAAGATGGCGGCACGCTGGAGGCAGGGGAGCGCATCGTCAGCAAGCTGGTGGAAGAGGGCGACCCG
CGCGTTGCGCTCTACCGGGACATGAACGTCGCCATCGGCGGCACCGAGACCGCGTTGCGCGCGGTGCAGGAAATCCAGTT
TCGGTTCTTGATGGCCGCCTCGGCTGCCGGGGTGATCGAGATGCGGATCGACGCCGATGGGCTGCGTGCCTTGATGAAGG
CGCAAGAAGGCGAGATGCGACGCGAGATGGCCGCATCAAGCCTTGCGCAATCGGCCTATATCTATCGTGACTTCACCATC
GAAGAGGTCGAGGCCTATGTCGAGGCGCTGGAGCATCCGCTGATGCAGGAAGTCTATGAACTCTTGAACGCGATCCAATA
TGAGATCCAGGCCAACCGCTTTGAGGAACTGGCGCATCGGATGTCGGATCTGCAGCCCGTGCAGGAACTCTGA

Upstream 100 bases:

>100_bases
TAAAGGTGATTTTCTCCGCGTGCAAGGGGCGATTTCACAGTTCGTTCAAGAAAGTCGAATTTTGGTTTGCTGAACGCAAT
TGTGCTTCTACATTTATTGT

Downstream 100 bases:

>100_bases
GCATCCAACGGCCCCGTAGCAGGTGTTGGGTGATGTCCGTCTGTGGATAAATCTTTGCCGAGTGCAGACGAAGGCTTGAC
TTTGACTTTGTTCAGGTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MIRSLPAPLRPAAFVTVLLNGLFAAAFAVVIALPSKTEAADRDQVKAFLEITGFDVALDSIAESASDAPKILGADAGDFG
LAWESLTAEVFDTQKMRDTALDILEQTLSAEALFFAAEFYASDLGQRLVAVENASHMNEDGGTLEAGERIVSKLVEEGDP
RVALYRDMNVAIGGTETALRAVQEIQFRFLMAASAAGVIEMRIDADGLRALMKAQEGEMRREMAASSLAQSAYIYRDFTI
EEVEAYVEALEHPLMQEVYELLNAIQYEIQANRFEELAHRMSDLQPVQEL

Sequences:

>Translated_290_residues
MIRSLPAPLRPAAFVTVLLNGLFAAAFAVVIALPSKTEAADRDQVKAFLEITGFDVALDSIAESASDAPKILGADAGDFG
LAWESLTAEVFDTQKMRDTALDILEQTLSAEALFFAAEFYASDLGQRLVAVENASHMNEDGGTLEAGERIVSKLVEEGDP
RVALYRDMNVAIGGTETALRAVQEIQFRFLMAASAAGVIEMRIDADGLRALMKAQEGEMRREMAASSLAQSAYIYRDFTI
EEVEAYVEALEHPLMQEVYELLNAIQYEIQANRFEELAHRMSDLQPVQEL
>Mature_290_residues
MIRSLPAPLRPAAFVTVLLNGLFAAAFAVVIALPSKTEAADRDQVKAFLEITGFDVALDSIAESASDAPKILGADAGDFG
LAWESLTAEVFDTQKMRDTALDILEQTLSAEALFFAAEFYASDLGQRLVAVENASHMNEDGGTLEAGERIVSKLVEEGDP
RVALYRDMNVAIGGTETALRAVQEIQFRFLMAASAAGVIEMRIDADGLRALMKAQEGEMRREMAASSLAQSAYIYRDFTI
EEVEAYVEALEHPLMQEVYELLNAIQYEIQANRFEELAHRMSDLQPVQEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31775; Mature: 31775

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSLPAPLRPAAFVTVLLNGLFAAAFAVVIALPSKTEAADRDQVKAFLEITGFDVALDS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IAESASDAPKILGADAGDFGLAWESLTAEVFDTQKMRDTALDILEQTLSAEALFFAAEFY
HHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASDLGQRLVAVENASHMNEDGGTLEAGERIVSKLVEEGDPRVALYRDMNVAIGGTETALR
HHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCEEEECCHHHHHH
AVQEIQFRFLMAASAAGVIEMRIDADGLRALMKAQEGEMRREMAASSLAQSAYIYRDFTI
HHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EEVEAYVEALEHPLMQEVYELLNAIQYEIQANRFEELAHRMSDLQPVQEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure
MIRSLPAPLRPAAFVTVLLNGLFAAAFAVVIALPSKTEAADRDQVKAFLEITGFDVALDS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IAESASDAPKILGADAGDFGLAWESLTAEVFDTQKMRDTALDILEQTLSAEALFFAAEFY
HHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASDLGQRLVAVENASHMNEDGGTLEAGERIVSKLVEEGDPRVALYRDMNVAIGGTETALR
HHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCEEEECCHHHHHH
AVQEIQFRFLMAASAAGVIEMRIDADGLRALMKAQEGEMRREMAASSLAQSAYIYRDFTI
HHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EEVEAYVEALEHPLMQEVYELLNAIQYEIQANRFEELAHRMSDLQPVQEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA