Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080970

Identifier: 99080970

GI number: 99080970

Start: 1214188

End: 1214706

Strand: Direct

Name: 99080970

Synonym: TM1040_1129

Alternate gene names: NA

Gene position: 1214188-1214706 (Clockwise)

Preceding gene: 99080969

Following gene: 99080971

Centisome position: 37.93

GC content: 60.12

Gene sequence:

>519_bases
ATGTCCAAGGATGTGATCCGTCTGACCATTCCTGATGTGTCGGATTTTGCCAAACATTTACGCCGCGCGTTTGCGCAGGC
GCCCGGCCATGTGGAAATGCTGAACCATGTGGCCCGCGCAGCGGGGTATCGCAATTTTCAGCATCTGCGCCAACAGAACC
CGCCATCACCCGAGATCGACCATAAGCGTATCGCGCGCGCGGCGCGCTATTTCGATGCGCAGGCGCGCTGGCAGAGCTGG
CCGACCAAACGCGGTGTGCGAGAGCTGTGTCTTTGGGTGATCTGGGCGCGTCTGCCGTCGCGGACCTACTTCAGCGAGCG
GGAGATTTCGGCCGTCATTGACGAACACTGCGTGTTTCGCGATGCCGCACAGATCCGCCGGAGCCTGATTGAGATGGGGC
TTTTGCGTCGCAACCGGGATGGATCTGATTATCAGCGGGTCGAGACGGCGATGGACCCGCATGGGGCTGCGCTGATGTCT
TTGCTCGCCGAGCGGCAAAAAGCGCAAGAAAATCCCTAA

Upstream 100 bases:

>100_bases
CATTGCTTCCATTGGACTCCTGATCGGGGTGCCACTGGATAAGGGCGGACATCCATATGGCCTGCGCCATATCCGGCATC
CTGAAGTTACGGAGGACATG

Downstream 100 bases:

>100_bases
ATAGCCTGACGCGGCGTTTGTCTTTTCGAGGTCGGATGCTTAGGTCAACATGCGCATAACTCGAACAGGGATATTTCACG
CATGGACTACCGCGACATTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEIDHKRIARAARYFDAQARWQSW
PTKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFRDAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMS
LLAERQKAQENP

Sequences:

>Translated_172_residues
MSKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEIDHKRIARAARYFDAQARWQSW
PTKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFRDAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMS
LLAERQKAQENP
>Mature_171_residues
SKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEIDHKRIARAARYFDAQARWQSWP
TKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFRDAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMSL
LAERQKAQENP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20014; Mature: 19883

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEID
CCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
HKRIARAARYFDAQARWQSWPTKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMSLLAERQKAQENP
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEID
CCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
HKRIARAARYFDAQARWQSWPTKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMSLLAERQKAQENP
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA