| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080970
Identifier: 99080970
GI number: 99080970
Start: 1214188
End: 1214706
Strand: Direct
Name: 99080970
Synonym: TM1040_1129
Alternate gene names: NA
Gene position: 1214188-1214706 (Clockwise)
Preceding gene: 99080969
Following gene: 99080971
Centisome position: 37.93
GC content: 60.12
Gene sequence:
>519_bases ATGTCCAAGGATGTGATCCGTCTGACCATTCCTGATGTGTCGGATTTTGCCAAACATTTACGCCGCGCGTTTGCGCAGGC GCCCGGCCATGTGGAAATGCTGAACCATGTGGCCCGCGCAGCGGGGTATCGCAATTTTCAGCATCTGCGCCAACAGAACC CGCCATCACCCGAGATCGACCATAAGCGTATCGCGCGCGCGGCGCGCTATTTCGATGCGCAGGCGCGCTGGCAGAGCTGG CCGACCAAACGCGGTGTGCGAGAGCTGTGTCTTTGGGTGATCTGGGCGCGTCTGCCGTCGCGGACCTACTTCAGCGAGCG GGAGATTTCGGCCGTCATTGACGAACACTGCGTGTTTCGCGATGCCGCACAGATCCGCCGGAGCCTGATTGAGATGGGGC TTTTGCGTCGCAACCGGGATGGATCTGATTATCAGCGGGTCGAGACGGCGATGGACCCGCATGGGGCTGCGCTGATGTCT TTGCTCGCCGAGCGGCAAAAAGCGCAAGAAAATCCCTAA
Upstream 100 bases:
>100_bases CATTGCTTCCATTGGACTCCTGATCGGGGTGCCACTGGATAAGGGCGGACATCCATATGGCCTGCGCCATATCCGGCATC CTGAAGTTACGGAGGACATG
Downstream 100 bases:
>100_bases ATAGCCTGACGCGGCGTTTGTCTTTTCGAGGTCGGATGCTTAGGTCAACATGCGCATAACTCGAACAGGGATATTTCACG CATGGACTACCGCGACATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MSKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEIDHKRIARAARYFDAQARWQSW PTKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFRDAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMS LLAERQKAQENP
Sequences:
>Translated_172_residues MSKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEIDHKRIARAARYFDAQARWQSW PTKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFRDAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMS LLAERQKAQENP >Mature_171_residues SKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEIDHKRIARAARYFDAQARWQSWP TKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFRDAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMSL LAERQKAQENP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20014; Mature: 19883
Theoretical pI: Translated: 10.55; Mature: 10.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEID CCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC HKRIARAARYFDAQARWQSWPTKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFR HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH DAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMSLLAERQKAQENP HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEID CCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC HKRIARAARYFDAQARWQSWPTKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFR HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH DAAQIRRSLIEMGLLRRNRDGSDYQRVETAMDPHGAALMSLLAERQKAQENP HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA