Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080956

Identifier: 99080956

GI number: 99080956

Start: 1197648

End: 1198193

Strand: Direct

Name: 99080956

Synonym: TM1040_1115

Alternate gene names: NA

Gene position: 1197648-1198193 (Clockwise)

Preceding gene: 99080955

Following gene: 99080961

Centisome position: 37.42

GC content: 62.64

Gene sequence:

>546_bases
ATGCCGGAAGTGACCATTCATATCGGGGGCCGCGATTTTGAGGTGTCCTGTCAGGAAGGCGAAGAGAGCTTTCTGCATAT
GGCGGCGGGGATGCTCGACGACGAGGCGCAGGTGCTGTCGGATCAAATCGGGCGGATGCCCGAGGCGCGGATGCTCTTGA
TGGCGGGTTTGATGCTTGCGGATAAGACCGCAGCCGTCGAGGACCGCATCAAGGAAGTCGAGGCCAAACTGGCCGAGAAA
GACGCGCTGCTCGAAGAGCGGGATGCAGAGCTCGAGGAGTTGCGCAACGCGCCACCACCGCCTGCTGAACAAATTGAGGT
GCCCGTGGTGCCGCCGCAGGTCGCCGAGACCCTCGCAGAGCTTGCGGCACGGGCCGAAGCGCTGGCGGGCGAGATCGAAG
AAAAAGCCGCGCCAGATGATGACGAAGACGACGATGAGGCTGCAACCACTCCCGCGGTGGATCCGAGCGCCGACGCAATG
GCGGCAGAAGGCAATGCGGATGAGGCCCGTGAAGAGACTCCTGACGACGTCAAGGAACAGGTCTGA

Upstream 100 bases:

>100_bases
CCGCCCGCGCCACCGATCAGGCCGAGGTCAACGCGGTGCTGGCCCGATTGGAGCCGCTCCTTGCCACAGCCCCCAACCTG
CCTGAAGGAGAAGAAGCCTG

Downstream 100 bases:

>100_bases
ACTCTGATCGCCCCGGGGCAGGCGCGCTGAGCAGTTGCGTCCACTAGTGCTGATGTCGCAGGAATGCTGATGTCGCAGGC
GCCCGGATATAAAGGCCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MPEVTIHIGGRDFEVSCQEGEESFLHMAAGMLDDEAQVLSDQIGRMPEARMLLMAGLMLADKTAAVEDRIKEVEAKLAEK
DALLEERDAELEELRNAPPPPAEQIEVPVVPPQVAETLAELAARAEALAGEIEEKAAPDDDEDDDEAATTPAVDPSADAM
AAEGNADEAREETPDDVKEQV

Sequences:

>Translated_181_residues
MPEVTIHIGGRDFEVSCQEGEESFLHMAAGMLDDEAQVLSDQIGRMPEARMLLMAGLMLADKTAAVEDRIKEVEAKLAEK
DALLEERDAELEELRNAPPPPAEQIEVPVVPPQVAETLAELAARAEALAGEIEEKAAPDDDEDDDEAATTPAVDPSADAM
AAEGNADEAREETPDDVKEQV
>Mature_180_residues
PEVTIHIGGRDFEVSCQEGEESFLHMAAGMLDDEAQVLSDQIGRMPEARMLLMAGLMLADKTAAVEDRIKEVEAKLAEKD
ALLEERDAELEELRNAPPPPAEQIEVPVVPPQVAETLAELAARAEALAGEIEEKAAPDDDEDDDEAATTPAVDPSADAMA
AEGNADEAREETPDDVKEQV

Specific function: Unknown

COG id: COG3027

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19459; Mature: 19327

Theoretical pI: Translated: 3.71; Mature: 3.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEVTIHIGGRDFEVSCQEGEESFLHMAAGMLDDEAQVLSDQIGRMPEARMLLMAGLMLA
CCCEEEEECCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
DKTAAVEDRIKEVEAKLAEKDALLEERDAELEELRNAPPPPAEQIEVPVVPPQVAETLAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHCEECCCCCHHHHHHHHH
LAARAEALAGEIEEKAAPDDDEDDDEAATTPAVDPSADAMAAEGNADEAREETPDDVKEQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHC
V
C
>Mature Secondary Structure 
PEVTIHIGGRDFEVSCQEGEESFLHMAAGMLDDEAQVLSDQIGRMPEARMLLMAGLMLA
CCEEEEECCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
DKTAAVEDRIKEVEAKLAEKDALLEERDAELEELRNAPPPPAEQIEVPVVPPQVAETLAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHCEECCCCCHHHHHHHHH
LAARAEALAGEIEEKAAPDDDEDDDEAATTPAVDPSADAMAAEGNADEAREETPDDVKEQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA