| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080955
Identifier: 99080955
GI number: 99080955
Start: 1196728
End: 1197648
Strand: Direct
Name: 99080955
Synonym: TM1040_1114
Alternate gene names: NA
Gene position: 1196728-1197648 (Clockwise)
Preceding gene: 99080953
Following gene: 99080956
Centisome position: 37.39
GC content: 63.19
Gene sequence:
>921_bases ATGGAGCAGTTAGAAGAACTACAGGGCCGCATCCAGACCGCGCTGCATCGTATCTATGGCGGCGTCGCCGCGCTGGAGCA AAAGCATGCCAATCGTCCGGTGCCGACACTGGAAGAGCTGGATATGCAAAAGCATGCGGAGCTTCTGGCCGATCTCGAAG ACGAGAAGATGGCCAATGCGCAGCTGATCGAACGGCTGCGCCTGCTGCATGGCCGGCTCGAGGACATGGAAAAGAAAGTG GCTGCCGTGGATGGCGCACAAGATCTGATTGCGCTGCATGCGGAACTGGAGCTGCTGCGCAACGAGGCCGGAAACTCCGT CGAAACGGAGGCACTGAAAGCCGAGGTCGCGCGCTTGAAGCAGGATCTTGAGGCCGCACGCAATCAGGCCGCAAGCGAGC GTGAAAAGCTCGAAGATGACCTGAGCGAAGCCACAGCCCAGAATGAACAGCTGCAAGCGCAGCTCTCGGCTCTGCCGGAG AGCCCTGCCGACACCGAGATGACGTCTGACGTGAAGGGCGATGCACATGCCGACAGCGCCGAGCTCGAAGCGCTGCGTGC AGAAGTCGCCGAATTGCGTGCGCGTGCGGAAGCCGCCGAAAGCGCCGCTGTCTCGCAGGATGTGGAGCCTGCTGACGAGG GCGTCAGCGCCGAGCTTGATCTGCGTCTGAGCGCCCTTGATGGCGAATTGCAGGGCCTGCGGGCCAGCAACGACCAGTTG CGCCAGTCCAATGCGGCCCTGCGTGCGGCCAATGCCGAAGGGGTTGCGGATCCTGCGCTCATCAACTCTGGCCTTGAGGC CGAGCTGGAGGGGCTGAAGGCCGCCCGCGCCACCGATCAGGCCGAGGTCAACGCGGTGCTGGCCCGATTGGAGCCGCTCC TTGCCACAGCCCCCAACCTGCCTGAAGGAGAAGAAGCCTGA
Upstream 100 bases:
>100_bases GACGGGTGGCAGGCATCGCGAAACGGCGACAGATCGGCTCGGGACGGGCAGGCCGCAGGCTACGGTCTTGGCCCCGGGAA GACGAGGTGAAGAGGAACGC
Downstream 100 bases:
>100_bases TGCCGGAAGTGACCATTCATATCGGGGGCCGCGATTTTGAGGTGTCCTGTCAGGAAGGCGAAGAGAGCTTTCTGCATATG GCGGCGGGGATGCTCGACGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 306; Mature: 306
Protein sequence:
>306_residues MEQLEELQGRIQTALHRIYGGVAALEQKHANRPVPTLEELDMQKHAELLADLEDEKMANAQLIERLRLLHGRLEDMEKKV AAVDGAQDLIALHAELELLRNEAGNSVETEALKAEVARLKQDLEAARNQAASEREKLEDDLSEATAQNEQLQAQLSALPE SPADTEMTSDVKGDAHADSAELEALRAEVAELRARAEAAESAAVSQDVEPADEGVSAELDLRLSALDGELQGLRASNDQL RQSNAALRAANAEGVADPALINSGLEAELEGLKAARATDQAEVNAVLARLEPLLATAPNLPEGEEA
Sequences:
>Translated_306_residues MEQLEELQGRIQTALHRIYGGVAALEQKHANRPVPTLEELDMQKHAELLADLEDEKMANAQLIERLRLLHGRLEDMEKKV AAVDGAQDLIALHAELELLRNEAGNSVETEALKAEVARLKQDLEAARNQAASEREKLEDDLSEATAQNEQLQAQLSALPE SPADTEMTSDVKGDAHADSAELEALRAEVAELRARAEAAESAAVSQDVEPADEGVSAELDLRLSALDGELQGLRASNDQL RQSNAALRAANAEGVADPALINSGLEAELEGLKAARATDQAEVNAVLARLEPLLATAPNLPEGEEA >Mature_306_residues MEQLEELQGRIQTALHRIYGGVAALEQKHANRPVPTLEELDMQKHAELLADLEDEKMANAQLIERLRLLHGRLEDMEKKV AAVDGAQDLIALHAELELLRNEAGNSVETEALKAEVARLKQDLEAARNQAASEREKLEDDLSEATAQNEQLQAQLSALPE SPADTEMTSDVKGDAHADSAELEALRAEVAELRARAEAAESAAVSQDVEPADEGVSAELDLRLSALDGELQGLRASNDQL RQSNAALRAANAEGVADPALINSGLEAELEGLKAARATDQAEVNAVLARLEPLLATAPNLPEGEEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32864; Mature: 32864
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQLEELQGRIQTALHRIYGGVAALEQKHANRPVPTLEELDMQKHAELLADLEDEKMANA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH QLIERLRLLHGRLEDMEKKVAAVDGAQDLIALHAELELLRNEAGNSVETEALKAEVARLK HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH QDLEAARNQAASEREKLEDDLSEATAQNEQLQAQLSALPESPADTEMTSDVKGDAHADSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHH ELEALRAEVAELRARAEAAESAAVSQDVEPADEGVSAELDLRLSALDGELQGLRASNDQL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHCCHHHCCCCCHHHH RQSNAALRAANAEGVADPALINSGLEAELEGLKAARATDQAEVNAVLARLEPLLATAPNL HHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCC PEGEEA CCCCCC >Mature Secondary Structure MEQLEELQGRIQTALHRIYGGVAALEQKHANRPVPTLEELDMQKHAELLADLEDEKMANA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH QLIERLRLLHGRLEDMEKKVAAVDGAQDLIALHAELELLRNEAGNSVETEALKAEVARLK HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH QDLEAARNQAASEREKLEDDLSEATAQNEQLQAQLSALPESPADTEMTSDVKGDAHADSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHH ELEALRAEVAELRARAEAAESAAVSQDVEPADEGVSAELDLRLSALDGELQGLRASNDQL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHCCHHHCCCCCHHHH RQSNAALRAANAEGVADPALINSGLEAELEGLKAARATDQAEVNAVLARLEPLLATAPNL HHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCC PEGEEA CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA