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The map label for this gene is ydaM [H]

Identifier: 99080876

GI number: 99080876

Start: 1114531

End: 1115472

Strand: Direct

Name: ydaM [H]

Synonym: TM1040_1035

Alternate gene names: 99080876

Gene position: 1114531-1115472 (Clockwise)

Preceding gene: 99080875

Following gene: 99080879

Centisome position: 34.82

GC content: 61.68

Gene sequence:

>942_bases
ATGGCAGCACAGACCGCACGCACGCGCGTTGATTTCTACCTCGGAGCCTGTTTGGCCGTGGTCTGTGCTGGCATGGTGGT
TCTGAATGTCTGTCGCGCGGATTACATCCTTGCGGGCGCCATTGCCGCTTTGCTGCTGAGTGTTGGCGCTGATCTTCAGG
CTGCGTATCGCGGCAGAACGCTGCCGATTCCCATCCCGGCGATCCTGATCGGGCTTGGCGCCGTGATTCTGTTCTCGGTC
TGGCGTCTGGGGCCACAGCTTGGGTTCTATGTCTTTCCCACATTGATTGGCGGCTATCTGGCCATGCCCGGACGCGGCGC
CCTGTGGTATTCCATCACGCTGATCGCGGGCGTGACCGCAGTTCTTGTGGCGATAGGCGCCGACACCGCGTTGGTGCTGC
GGTTGGGGTTTGCCCTGCTGATCTGCGTCGTTTTCCTGAGCTATGCCGCCAAACGCATTGTCGAAGCGCGCGATTCTCTT
GAGGACAGCGCCTTTCTGGATCCGCTCACCGGCTGCTTCAATCGCCGCCATCTTGCACGGGTGGCGCAGAGCCAGGACCT
GAGCAAAGCCGCCCTTATCTTGTTCGACCTTGATTACTTCAAAAGCGTCAACGACACCTATGGCCACCCCACCGGGGACT
TTGTGCTGCGGGCTGTCACCTCGCTTGTGCGCCAGTTCCTTGGCCCGGAGGATCTGTTTTTCCGCATCGGTGGCGAAGAG
TTCATGGTGTTGCGCCTGCGTTCGGAGGAGGGCAGTACGCGCGCCCTCGCGGAGAAATGTCGTGCGGCGCTTGATGACTC
GCAGATCCTGTCGTCCCGGCGTGTCACGGCCACCTTCAGCTGCGCAGAGTTCGACGGGCGCACCGAGATCGAACCGGTAT
TGGGGCAAGCCGATGTGGCGCTGCTGCAGGCCAAAAGGGCAGGCCGCAACCGGGTCGTCTGA

Upstream 100 bases:

>100_bases
TGATGCAGACTTCATTTTTGCCCGCGGAAAATTCATTAAGTTTGGAAATTCGAAAGCCTTGGGGTGACTCGTTGCCTCGC
CGTGGTCATAGGACGGACAA

Downstream 100 bases:

>100_bases
TGGGGAAGCCGGGGGCGGGATCAAGGACGCCGTCCAGTCGGCCAGTCTCCCGGTTGCCCGGTTGCCCTGTCGCCCAGTGG
AAAACGCCACCAAAAGAAAA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAAQTARTRVDFYLGACLAVVCAGMVVLNVCRADYILAGAIAALLLSVGADLQAAYRGRTLPIPIPAILIGLGAVILFSV
WRLGPQLGFYVFPTLIGGYLAMPGRGALWYSITLIAGVTAVLVAIGADTALVLRLGFALLICVVFLSYAAKRIVEARDSL
EDSAFLDPLTGCFNRRHLARVAQSQDLSKAALILFDLDYFKSVNDTYGHPTGDFVLRAVTSLVRQFLGPEDLFFRIGGEE
FMVLRLRSEEGSTRALAEKCRAALDDSQILSSRRVTATFSCAEFDGRTEIEPVLGQADVALLQAKRAGRNRVV

Sequences:

>Translated_313_residues
MAAQTARTRVDFYLGACLAVVCAGMVVLNVCRADYILAGAIAALLLSVGADLQAAYRGRTLPIPIPAILIGLGAVILFSV
WRLGPQLGFYVFPTLIGGYLAMPGRGALWYSITLIAGVTAVLVAIGADTALVLRLGFALLICVVFLSYAAKRIVEARDSL
EDSAFLDPLTGCFNRRHLARVAQSQDLSKAALILFDLDYFKSVNDTYGHPTGDFVLRAVTSLVRQFLGPEDLFFRIGGEE
FMVLRLRSEEGSTRALAEKCRAALDDSQILSSRRVTATFSCAEFDGRTEIEPVLGQADVALLQAKRAGRNRVV
>Mature_312_residues
AAQTARTRVDFYLGACLAVVCAGMVVLNVCRADYILAGAIAALLLSVGADLQAAYRGRTLPIPIPAILIGLGAVILFSVW
RLGPQLGFYVFPTLIGGYLAMPGRGALWYSITLIAGVTAVLVAIGADTALVLRLGFALLICVVFLSYAAKRIVEARDSLE
DSAFLDPLTGCFNRRHLARVAQSQDLSKAALILFDLDYFKSVNDTYGHPTGDFVLRAVTSLVRQFLGPEDLFFRIGGEEF
MVLRLRSEEGSTRALAEKCRAALDDSQILSSRRVTATFSCAEFDGRTEIEPVLGQADVALLQAKRAGRNRVV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=36.9565217391304, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787262, Length=258, Percent_Identity=31.0077519379845, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=201, Percent_Identity=32.8358208955224, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=32.2784810126582, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=30.3370786516854, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=248, Percent_Identity=27.0161290322581, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=32.9479768786127, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=33.7579617834395, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788085, Length=185, Percent_Identity=29.1891891891892, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=188, Percent_Identity=27.1276595744681, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 33783; Mature: 33652

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQTARTRVDFYLGACLAVVCAGMVVLNVCRADYILAGAIAALLLSVGADLQAAYRGRT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
LPIPIPAILIGLGAVILFSVWRLGPQLGFYVFPTLIGGYLAMPGRGALWYSITLIAGVTA
CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
VLVAIGADTALVLRLGFALLICVVFLSYAAKRIVEARDSLEDSAFLDPLTGCFNRRHLAR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VAQSQDLSKAALILFDLDYFKSVNDTYGHPTGDFVLRAVTSLVRQFLGPEDLFFRIGGEE
HHHHCCHHHHHHHEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEEEECCCE
FMVLRLRSEEGSTRALAEKCRAALDDSQILSSRRVTATFSCAEFDGRTEIEPVLGQADVA
EEEEEEECCCCCHHHHHHHHHHHCCHHHHHHCCCCEEEEEHHHCCCCCCCHHHHCHHHHH
LLQAKRAGRNRVV
HHHHHHCCCCCCC
>Mature Secondary Structure 
AAQTARTRVDFYLGACLAVVCAGMVVLNVCRADYILAGAIAALLLSVGADLQAAYRGRT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
LPIPIPAILIGLGAVILFSVWRLGPQLGFYVFPTLIGGYLAMPGRGALWYSITLIAGVTA
CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
VLVAIGADTALVLRLGFALLICVVFLSYAAKRIVEARDSLEDSAFLDPLTGCFNRRHLAR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VAQSQDLSKAALILFDLDYFKSVNDTYGHPTGDFVLRAVTSLVRQFLGPEDLFFRIGGEE
HHHHCCHHHHHHHEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEEEECCCE
FMVLRLRSEEGSTRALAEKCRAALDDSQILSSRRVTATFSCAEFDGRTEIEPVLGQADVA
EEEEEEECCCCCHHHHHHHHHHHCCHHHHHHCCCCEEEEEHHHCCCCCCCHHHHCHHHHH
LLQAKRAGRNRVV
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]