Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080873

Identifier: 99080873

GI number: 99080873

Start: 1111339

End: 1112463

Strand: Direct

Name: 99080873

Synonym: TM1040_1032

Alternate gene names: NA

Gene position: 1111339-1112463 (Clockwise)

Preceding gene: 99080872

Following gene: 99080874

Centisome position: 34.72

GC content: 61.07

Gene sequence:

>1125_bases
ATGATGAGCACCAAAACCCTTGCGGTGGGCTCCAGCGCCCTTGCGCTGTCCGCCCTTCTTGCCGCCCCCGCCGTTGCGGG
CCCCACCTATACCTCGGACAATGGTGGGTCCTTCCGTTGGTACGGTCAGCTCAACCTGGCCTATCAGGGCTATGACGACG
GTCAGGAAGACTATAACCGACTCGTTGATAACGGAAATTCCGGATCGCGCGTTGGCTTCTGGCTGGAGCAGCCCTTTGGC
GAGAACACCCTGAAATTCCGCTTTGAGACCTCCTTGTCGTTGCGCGGCTCGGATGGTGTGAACCAGAACGACCAAGGCGA
CATCACTGATTGGACCCGCAGCGATCTGCGTCATGTTGATCTGCAGTGGCACACCCCGCGCTACGGCACCTTCTCGCTGG
GTCAGGGCTCCATGGCGGCAGATGGCGCCACCGGCATTGATCTCTCTGGCACCGGCGTTGTGGCTGGCTCTGCAGTCGCG
GATGCTGCGGGGGGATATTTCCTGCGTGACACCGCAGGCAACCTCACCGGGATCGAAATCGGCGATGTTTTCTCGACCTT
TGACGGCTCGCGTCGGGGCCGTATCCGCTATGACTCGCCGGAATTCTCGGGCTTTACCGTCTCTGCCTCTTATGGTGAGG
ACATCCTGACCCGGGACGCTGACACCCAGCAGTACGACATTGCCCTGAATTACCTGAACGAAGACCTCGGTGATTTCACT
GTGGCCGGTGCACTGGCCGTCAGCTGGACCGAAAAGGGCGGCTCTGAGGACACCCGTGACACCATCGCTTCGGCGGCGGT
TCTGCACGAACCCACGGGCCTCTCGCTGAGCGCGGCCACTGGCGACCGGGATACCGGTGGCGACTACGGCTATGTCAAGC
TGGGCTACACCGCGAACCTGATCTCCGTTGGCGCCACCGCCTTCTCTGTCGACTACTATGACGGCTCGGATCTGGTTTCC
ACCAACGACAGCGCCGAGTCCTTTGGCATCGCGGCGGTCCAGAACTTCGACCAGCAGAACCTCGAGGCCTATATCGCGTA
TCGCGAATATTCCTACGATGATGCCTCCGCCACCAACTACCAGGACGGCTCTGCCATCCTTGCGGGCGCGCGCTGGAAGT
TCTAA

Upstream 100 bases:

>100_bases
CTTTCAAGACCTTTTCCCAAAAAACTTAGGTGTTAGCTCCGTTGTCAGCCGGGTCCGGGGATGGAGGACGTCCGGCTGGC
TAAAAAACCAGGAGACTCAG

Downstream 100 bases:

>100_bases
GCCACGTCTCAAGACAAATGCGGCGGCTGCGAGGGGTTTTTACCTCGTGACTCACTTGCCTTCGCCGCATGTCGTCATGC
TGCGCCCTCCGGTCCCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNRLVDNGNSGSRVGFWLEQPFG
ENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVDLQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVA
DAAGGYFLRDTAGNLTGIEIGDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT
VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANLISVGATAFSVDYYDGSDLVS
TNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNYQDGSAILAGARWKF

Sequences:

>Translated_374_residues
MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNRLVDNGNSGSRVGFWLEQPFG
ENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVDLQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVA
DAAGGYFLRDTAGNLTGIEIGDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT
VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANLISVGATAFSVDYYDGSDLVS
TNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNYQDGSAILAGARWKF
>Mature_374_residues
MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNRLVDNGNSGSRVGFWLEQPFG
ENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVDLQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVA
DAAGGYFLRDTAGNLTGIEIGDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT
VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANLISVGATAFSVDYYDGSDLVS
TNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNYQDGSAILAGARWKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39868; Mature: 39868

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNR
CCCCCEEECCCHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCHHHHHH
LVDNGNSGSRVGFWLEQPFGENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVD
HHCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCEEEE
LQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVADAAGGYFLRDTAGNLTGIEI
EEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCEEEEECCCCCCEEEH
GDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT
HHHHHHCCCCCCCCEEECCCCCCCEEEECCCCCHHHCCCCCCCEEEEEEEHHHCCCCCEE
VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANL
EEEEEEEEEECCCCCCHHHHHHHHHHHEECCCCCEEEECCCCCCCCCCEEEEEECCEEEE
ISVGATAFSVDYYDGSDLVSTNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNY
EEECCEEEEEEEECCCCEEECCCCCHHCCCHHHHCCCCCCCEEEEEEEEECCCCCCCCCC
QDGSAILAGARWKF
CCCCEEEECCCCCC
>Mature Secondary Structure
MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNR
CCCCCEEECCCHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCHHHHHH
LVDNGNSGSRVGFWLEQPFGENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVD
HHCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCEEEE
LQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVADAAGGYFLRDTAGNLTGIEI
EEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCEEEEECCCCCCEEEH
GDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT
HHHHHHCCCCCCCCEEECCCCCCCEEEECCCCCHHHCCCCCCCEEEEEEEHHHCCCCCEE
VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANL
EEEEEEEEEECCCCCCHHHHHHHHHHHEECCCCCEEEECCCCCCCCCCEEEEEECCEEEE
ISVGATAFSVDYYDGSDLVSTNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNY
EEECCEEEEEEEECCCCEEECCCCCHHCCCHHHHCCCCCCCEEEEEEEEECCCCCCCCCC
QDGSAILAGARWKF
CCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA