Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080873
Identifier: 99080873
GI number: 99080873
Start: 1111339
End: 1112463
Strand: Direct
Name: 99080873
Synonym: TM1040_1032
Alternate gene names: NA
Gene position: 1111339-1112463 (Clockwise)
Preceding gene: 99080872
Following gene: 99080874
Centisome position: 34.72
GC content: 61.07
Gene sequence:
>1125_bases ATGATGAGCACCAAAACCCTTGCGGTGGGCTCCAGCGCCCTTGCGCTGTCCGCCCTTCTTGCCGCCCCCGCCGTTGCGGG CCCCACCTATACCTCGGACAATGGTGGGTCCTTCCGTTGGTACGGTCAGCTCAACCTGGCCTATCAGGGCTATGACGACG GTCAGGAAGACTATAACCGACTCGTTGATAACGGAAATTCCGGATCGCGCGTTGGCTTCTGGCTGGAGCAGCCCTTTGGC GAGAACACCCTGAAATTCCGCTTTGAGACCTCCTTGTCGTTGCGCGGCTCGGATGGTGTGAACCAGAACGACCAAGGCGA CATCACTGATTGGACCCGCAGCGATCTGCGTCATGTTGATCTGCAGTGGCACACCCCGCGCTACGGCACCTTCTCGCTGG GTCAGGGCTCCATGGCGGCAGATGGCGCCACCGGCATTGATCTCTCTGGCACCGGCGTTGTGGCTGGCTCTGCAGTCGCG GATGCTGCGGGGGGATATTTCCTGCGTGACACCGCAGGCAACCTCACCGGGATCGAAATCGGCGATGTTTTCTCGACCTT TGACGGCTCGCGTCGGGGCCGTATCCGCTATGACTCGCCGGAATTCTCGGGCTTTACCGTCTCTGCCTCTTATGGTGAGG ACATCCTGACCCGGGACGCTGACACCCAGCAGTACGACATTGCCCTGAATTACCTGAACGAAGACCTCGGTGATTTCACT GTGGCCGGTGCACTGGCCGTCAGCTGGACCGAAAAGGGCGGCTCTGAGGACACCCGTGACACCATCGCTTCGGCGGCGGT TCTGCACGAACCCACGGGCCTCTCGCTGAGCGCGGCCACTGGCGACCGGGATACCGGTGGCGACTACGGCTATGTCAAGC TGGGCTACACCGCGAACCTGATCTCCGTTGGCGCCACCGCCTTCTCTGTCGACTACTATGACGGCTCGGATCTGGTTTCC ACCAACGACAGCGCCGAGTCCTTTGGCATCGCGGCGGTCCAGAACTTCGACCAGCAGAACCTCGAGGCCTATATCGCGTA TCGCGAATATTCCTACGATGATGCCTCCGCCACCAACTACCAGGACGGCTCTGCCATCCTTGCGGGCGCGCGCTGGAAGT TCTAA
Upstream 100 bases:
>100_bases CTTTCAAGACCTTTTCCCAAAAAACTTAGGTGTTAGCTCCGTTGTCAGCCGGGTCCGGGGATGGAGGACGTCCGGCTGGC TAAAAAACCAGGAGACTCAG
Downstream 100 bases:
>100_bases GCCACGTCTCAAGACAAATGCGGCGGCTGCGAGGGGTTTTTACCTCGTGACTCACTTGCCTTCGCCGCATGTCGTCATGC TGCGCCCTCCGGTCCCTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 374; Mature: 374
Protein sequence:
>374_residues MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNRLVDNGNSGSRVGFWLEQPFG ENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVDLQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVA DAAGGYFLRDTAGNLTGIEIGDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANLISVGATAFSVDYYDGSDLVS TNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNYQDGSAILAGARWKF
Sequences:
>Translated_374_residues MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNRLVDNGNSGSRVGFWLEQPFG ENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVDLQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVA DAAGGYFLRDTAGNLTGIEIGDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANLISVGATAFSVDYYDGSDLVS TNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNYQDGSAILAGARWKF >Mature_374_residues MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNRLVDNGNSGSRVGFWLEQPFG ENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVDLQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVA DAAGGYFLRDTAGNLTGIEIGDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANLISVGATAFSVDYYDGSDLVS TNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNYQDGSAILAGARWKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39868; Mature: 39868
Theoretical pI: Translated: 3.98; Mature: 3.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNR CCCCCEEECCCHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCHHHHHH LVDNGNSGSRVGFWLEQPFGENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVD HHCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCEEEE LQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVADAAGGYFLRDTAGNLTGIEI EEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCEEEEECCCCCCEEEH GDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT HHHHHHCCCCCCCCEEECCCCCCCEEEECCCCCHHHCCCCCCCEEEEEEEHHHCCCCCEE VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANL EEEEEEEEEECCCCCCHHHHHHHHHHHEECCCCCEEEECCCCCCCCCCEEEEEECCEEEE ISVGATAFSVDYYDGSDLVSTNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNY EEECCEEEEEEEECCCCEEECCCCCHHCCCHHHHCCCCCCCEEEEEEEEECCCCCCCCCC QDGSAILAGARWKF CCCCEEEECCCCCC >Mature Secondary Structure MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNR CCCCCEEECCCHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCHHHHHH LVDNGNSGSRVGFWLEQPFGENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVD HHCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCEEEE LQWHTPRYGTFSLGQGSMAADGATGIDLSGTGVVAGSAVADAAGGYFLRDTAGNLTGIEI EEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCEEEEECCCCCCEEEH GDVFSTFDGSRRGRIRYDSPEFSGFTVSASYGEDILTRDADTQQYDIALNYLNEDLGDFT HHHHHHCCCCCCCCEEECCCCCCCEEEECCCCCHHHCCCCCCCEEEEEEEHHHCCCCCEE VAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAATGDRDTGGDYGYVKLGYTANL EEEEEEEEEECCCCCCHHHHHHHHHHHEECCCCCEEEECCCCCCCCCCEEEEEECCEEEE ISVGATAFSVDYYDGSDLVSTNDSAESFGIAAVQNFDQQNLEAYIAYREYSYDDASATNY EEECCEEEEEEEECCCCEEECCCCCHHCCCHHHHCCCCCCCEEEEEEEEECCCCCCCCCC QDGSAILAGARWKF CCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA