| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99080866
Identifier: 99080866
GI number: 99080866
Start: 1096959
End: 1097507
Strand: Reverse
Name: 99080866
Synonym: TM1040_1025
Alternate gene names: NA
Gene position: 1097507-1096959 (Counterclockwise)
Preceding gene: 99080877
Following gene: 99080864
Centisome position: 34.29
GC content: 65.39
Gene sequence:
>549_bases GTGTCCTATTCAAAGTCACCGCCCTCCCTCGCGGGATCGGATCAGCACGCCCGGAGCGTGCGCGCAGGTCTGCGTCCGCT CAGTGGCATTGGTGCTGCGACCGAGGTGCTGACGCGCACGGGCTATAAACATGCCTCTAAGCTTAGCGTGGGCGACCATG TGATCACCCGCGACCGTGGTCTTCAGCCCATCACGCGTATCACCCGCCAATTCGCGCGCAGCCGGATGGTCCGCTTTGCG GCCGAGGCTCTGGGCACAGACAAGCCCGAGCAGGACGTCCTTCTCCCTGCCCGCCAGTTGGTGTTGGTCCGGGATTGGCG GGCTGAGGCACTCTTTGGCCGCCACGAGGCGCGCGTGCAGGCGGCGGCGCTCATTGACGATCACTATATCACCGAGGCCG GCATGCAGCAGTTGGACTGTGTGCAGATCTGGCTCGACGCGCCGTCCGTCCTCTATGTGCGCGGCATGGAAGTGCTGAGC GCGCATGCCTTCGACGATACCTTGGCCCCGAGGGTCGTCCCTATCCCGCAGGCATGCCGCCCGCTCTAG
Upstream 100 bases:
>100_bases GATGCACCTCATCTCCGGCCTTCTTTCGCCATATTTATCGCGCAAGTGATGAAACCTGCATCATTGCACATCACACACGG TATCACCGGGAGGCCCGCCT
Downstream 100 bases:
>100_bases AGCCCCAACTTGCGAAACACATGGGGCAGTTGCTCAGGCAAATCCTCTGCGATCAGCCCCGGACCAAACTGCCGCGCGCA GTCGGCATGTAACCAGGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MSYSKSPPSLAGSDQHARSVRAGLRPLSGIGAATEVLTRTGYKHASKLSVGDHVITRDRGLQPITRITRQFARSRMVRFA AEALGTDKPEQDVLLPARQLVLVRDWRAEALFGRHEARVQAAALIDDHYITEAGMQQLDCVQIWLDAPSVLYVRGMEVLS AHAFDDTLAPRVVPIPQACRPL
Sequences:
>Translated_182_residues MSYSKSPPSLAGSDQHARSVRAGLRPLSGIGAATEVLTRTGYKHASKLSVGDHVITRDRGLQPITRITRQFARSRMVRFA AEALGTDKPEQDVLLPARQLVLVRDWRAEALFGRHEARVQAAALIDDHYITEAGMQQLDCVQIWLDAPSVLYVRGMEVLS AHAFDDTLAPRVVPIPQACRPL >Mature_181_residues SYSKSPPSLAGSDQHARSVRAGLRPLSGIGAATEVLTRTGYKHASKLSVGDHVITRDRGLQPITRITRQFARSRMVRFAA EALGTDKPEQDVLLPARQLVLVRDWRAEALFGRHEARVQAAALIDDHYITEAGMQQLDCVQIWLDAPSVLYVRGMEVLSA HAFDDTLAPRVVPIPQACRPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20060; Mature: 19929
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYSKSPPSLAGSDQHARSVRAGLRPLSGIGAATEVLTRTGYKHASKLSVGDHVITRDRG CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCC LQPITRITRQFARSRMVRFAAEALGTDKPEQDVLLPARQLVLVRDWRAEALFGRHEARVQ CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAALIDDHYITEAGMQQLDCVQIWLDAPSVLYVRGMEVLSAHAFDDTLAPRVVPIPQACR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCEECCCHHCC PL CC >Mature Secondary Structure SYSKSPPSLAGSDQHARSVRAGLRPLSGIGAATEVLTRTGYKHASKLSVGDHVITRDRG CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCC LQPITRITRQFARSRMVRFAAEALGTDKPEQDVLLPARQLVLVRDWRAEALFGRHEARVQ CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAALIDDHYITEAGMQQLDCVQIWLDAPSVLYVRGMEVLSAHAFDDTLAPRVVPIPQACR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCEECCCHHCC PL CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA