| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is vdlC [H]
Identifier: 99080824
GI number: 99080824
Start: 1050757
End: 1051590
Strand: Direct
Name: vdlC [H]
Synonym: TM1040_0983
Alternate gene names: 99080824
Gene position: 1050757-1051590 (Clockwise)
Preceding gene: 99080822
Following gene: 99080825
Centisome position: 32.83
GC content: 58.15
Gene sequence:
>834_bases ATGACAACATCGAAACATAAGGTCATCGTCGTGACAGGCGCATCTTCCGGCATCGGGAAAACCGGCGCTCTGCGGCTTAT TTCCGAGGGCTATACCGTCTATGGCGCGGCCCGCAGTGTCGACAAGATGCAGGATCTCGTCGTGGCAGGCGGCCATGCGC TGCCTCTTGATGTCACTGATGCAAGCTCGGTGAAACAGGCCGTGGCGCAGGTTCTAAAGGAGCAAGGGCGGATCGATGTG CTGTGGAACAACGCTGGCTATTCTGTTGCGGGCGCTGTCGAGGATGTGCCACTGTTGGATGCCCGTCAGCAGTTTGAGGT GAACCTTTTTGGTGTTGCCGAGATCACAAAGACGGTTCTGCCCCAGATGCGCAAGCAGCGCTCTGGGCTGATTATCAATA CGAGTTCCGTCGGTGGCAAAGTCTTTTCCCCACTCAACGCGTGGTATCACGCCTCTAAATTTGCGCTTGAGGGGTGGAGT GATGCGCTCCGGCTTGAGCTGGCCGCGTTCAACATAGACGTCGTTGTTCTTGAGCCCGGCGGGATCAAGACCGACTTCGG CCGCACAATGTATGAGCCGCTCCTCAAAAGAGCCGAAGGCGGGGCTTATGAGGCATTTACGCAGAGAATCGCGGCCTCCT ACGAGCGCTATTACACCGCCAATGACAGCACTCTCTCGCCGCCTTCGGTTGTGGGGGAGGCGGTTGCAAAGATCGTTCAG AGCACACGCCCCCCGACGCGCTATGCGGTCGGGTACATGGCGCGCACCGCTCTTGCGCTGCGCTGGCTTCTCAGCGACCG CCTATTCTCGCGGATGATAATGACACAGTTCTAG
Upstream 100 bases:
>100_bases AGCGTTCGTATACATGTGGTGATGCTACAAGTACAGCGCATCCCCGCGCTTGACCAGACGGTTGCGAGGTTTTTGGGTGA TTGGAGTGAGTGGAACACAT
Downstream 100 bases:
>100_bases GGGCCCGGCGCTCTGTGTTCGCGCCAGCCTCAAGAAAAAGTCCAACATCCCTCTATGCTGGGTGTCCGTAGATTGATTTG CCAAAGAGAAGTTTTGGCTC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MTTSKHKVIVVTGASSGIGKTGALRLISEGYTVYGAARSVDKMQDLVVAGGHALPLDVTDASSVKQAVAQVLKEQGRIDV LWNNAGYSVAGAVEDVPLLDARQQFEVNLFGVAEITKTVLPQMRKQRSGLIINTSSVGGKVFSPLNAWYHASKFALEGWS DALRLELAAFNIDVVVLEPGGIKTDFGRTMYEPLLKRAEGGAYEAFTQRIAASYERYYTANDSTLSPPSVVGEAVAKIVQ STRPPTRYAVGYMARTALALRWLLSDRLFSRMIMTQF
Sequences:
>Translated_277_residues MTTSKHKVIVVTGASSGIGKTGALRLISEGYTVYGAARSVDKMQDLVVAGGHALPLDVTDASSVKQAVAQVLKEQGRIDV LWNNAGYSVAGAVEDVPLLDARQQFEVNLFGVAEITKTVLPQMRKQRSGLIINTSSVGGKVFSPLNAWYHASKFALEGWS DALRLELAAFNIDVVVLEPGGIKTDFGRTMYEPLLKRAEGGAYEAFTQRIAASYERYYTANDSTLSPPSVVGEAVAKIVQ STRPPTRYAVGYMARTALALRWLLSDRLFSRMIMTQF >Mature_276_residues TTSKHKVIVVTGASSGIGKTGALRLISEGYTVYGAARSVDKMQDLVVAGGHALPLDVTDASSVKQAVAQVLKEQGRIDVL WNNAGYSVAGAVEDVPLLDARQQFEVNLFGVAEITKTVLPQMRKQRSGLIINTSSVGGKVFSPLNAWYHASKFALEGWSD ALRLELAAFNIDVVVLEPGGIKTDFGRTMYEPLLKRAEGGAYEAFTQRIAASYERYYTANDSTLSPPSVVGEAVAKIVQS TRPPTRYAVGYMARTALALRWLLSDRLFSRMIMTQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=256, Percent_Identity=33.203125, Blast_Score=125, Evalue=3e-29, Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=33.5051546391753, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI223718074, Length=256, Percent_Identity=31.640625, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=37.3684210526316, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI150247226, Length=268, Percent_Identity=31.7164179104478, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI40548397, Length=269, Percent_Identity=32.7137546468402, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI214010158, Length=269, Percent_Identity=32.7137546468402, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI214010156, Length=269, Percent_Identity=32.7137546468402, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI22758144, Length=269, Percent_Identity=32.7137546468402, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI44680136, Length=277, Percent_Identity=29.6028880866426, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI44680133, Length=277, Percent_Identity=29.6028880866426, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI17738292, Length=277, Percent_Identity=29.6028880866426, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI22507405, Length=266, Percent_Identity=30.8270676691729, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI157739938, Length=191, Percent_Identity=28.7958115183246, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI4504503, Length=195, Percent_Identity=33.8461538461538, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI19743808, Length=269, Percent_Identity=29.7397769516729, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI32455239, Length=188, Percent_Identity=33.5106382978723, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI5031765, Length=188, Percent_Identity=33.5106382978723, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4503817, Length=182, Percent_Identity=29.6703296703297, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI50726952, Length=291, Percent_Identity=29.2096219931272, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI32483357, Length=194, Percent_Identity=34.020618556701, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI40254992, Length=196, Percent_Identity=32.1428571428571, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI119392083, Length=188, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI109715829, Length=261, Percent_Identity=25.2873563218391, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=30.5699481865285, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI210032110, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI59889578, Length=132, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI225579078, Length=205, Percent_Identity=30.2439024390244, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI5031737, Length=202, Percent_Identity=33.6633663366337, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI33667109, Length=201, Percent_Identity=33.8308457711443, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=30.1507537688442, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1786701, Length=269, Percent_Identity=31.9702602230483, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1787335, Length=194, Percent_Identity=36.0824742268041, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=31.7948717948718, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786812, Length=190, Percent_Identity=32.1052631578947, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787820, Length=213, Percent_Identity=27.6995305164319, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1788459, Length=186, Percent_Identity=32.258064516129, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87082160, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790717, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1787905, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI2367175, Length=200, Percent_Identity=31.5, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71997402, Length=199, Percent_Identity=36.6834170854271, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17570069, Length=193, Percent_Identity=37.3056994818653, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17557780, Length=274, Percent_Identity=28.4671532846715, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=31.1881188118812, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=31.4432989690722, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=32.994923857868, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI115534660, Length=188, Percent_Identity=29.2553191489362, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17538480, Length=194, Percent_Identity=30.9278350515464, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71994604, Length=211, Percent_Identity=29.3838862559242, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562906, Length=209, Percent_Identity=29.1866028708134, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562990, Length=199, Percent_Identity=29.6482412060301, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560150, Length=199, Percent_Identity=30.1507537688442, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562908, Length=226, Percent_Identity=28.3185840707965, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=203, Percent_Identity=30.5418719211823, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17562910, Length=211, Percent_Identity=29.8578199052133, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI32563809, Length=276, Percent_Identity=26.8115942028986, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17507613, Length=276, Percent_Identity=26.8115942028986, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17508895, Length=184, Percent_Identity=28.2608695652174, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17565030, Length=194, Percent_Identity=29.8969072164948, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17559104, Length=209, Percent_Identity=26.7942583732057, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17568967, Length=189, Percent_Identity=35.978835978836, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=28.3582089552239, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17563726, Length=212, Percent_Identity=28.7735849056604, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71994600, Length=191, Percent_Identity=29.3193717277487, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193210355, Length=258, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71997099, Length=205, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71982365, Length=148, Percent_Identity=32.4324324324324, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17561402, Length=196, Percent_Identity=33.6734693877551, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17531453, Length=200, Percent_Identity=29, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17558628, Length=195, Percent_Identity=32.3076923076923, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=25.9541984732824, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=34.010152284264, Blast_Score=103, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6322067, Length=256, Percent_Identity=30.078125, Blast_Score=92, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=33.160621761658, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322226, Length=194, Percent_Identity=30.4123711340206, Blast_Score=69, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=217, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319635, Length=189, Percent_Identity=30.1587301587302, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=36.8421052631579, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI28571526, Length=195, Percent_Identity=36.4102564102564, Blast_Score=102, Evalue=4e-22, Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=35.3846153846154, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI23397609, Length=213, Percent_Identity=34.7417840375587, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24580925, Length=200, Percent_Identity=31, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI116007236, Length=212, Percent_Identity=31.1320754716981, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=33.1658291457286, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24651139, Length=260, Percent_Identity=28.4615384615385, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI116007238, Length=188, Percent_Identity=31.9148936170213, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24643142, Length=184, Percent_Identity=32.6086956521739, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24648944, Length=194, Percent_Identity=30.9278350515464, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24644339, Length=181, Percent_Identity=29.2817679558011, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=30.6532663316583, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007234, Length=210, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI21355319, Length=196, Percent_Identity=32.1428571428571, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24649181, Length=225, Percent_Identity=28.8888888888889, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24639444, Length=185, Percent_Identity=32.4324324324324, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007232, Length=186, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355631, Length=176, Percent_Identity=27.8409090909091, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21356301, Length=192, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24640442, Length=194, Percent_Identity=28.8659793814433, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641388, Length=198, Percent_Identity=29.2929292929293, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30084; Mature: 29953
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSKHKVIVVTGASSGIGKTGALRLISEGYTVYGAARSVDKMQDLVVAGGHALPLDVTD CCCCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCC ASSVKQAVAQVLKEQGRIDVLWNNAGYSVAGAVEDVPLLDARQQFEVNLFGVAEITKTVL HHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCHHEEEEEEHHHHHHHHH PQMRKQRSGLIINTSSVGGKVFSPLNAWYHASKFALEGWSDALRLELAAFNIDVVVLEPG HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEEEEEEECCC GIKTDFGRTMYEPLLKRAEGGAYEAFTQRIAASYERYYTANDSTLSPPSVVGEAVAKIVQ CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHH STRPPTRYAVGYMARTALALRWLLSDRLFSRMIMTQF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTSKHKVIVVTGASSGIGKTGALRLISEGYTVYGAARSVDKMQDLVVAGGHALPLDVTD CCCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCC ASSVKQAVAQVLKEQGRIDVLWNNAGYSVAGAVEDVPLLDARQQFEVNLFGVAEITKTVL HHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCHHEEEEEEHHHHHHHHH PQMRKQRSGLIINTSSVGGKVFSPLNAWYHASKFALEGWSDALRLELAAFNIDVVVLEPG HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEEEEEEECCC GIKTDFGRTMYEPLLKRAEGGAYEAFTQRIAASYERYYTANDSTLSPPSVVGEAVAKIVQ CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHH STRPPTRYAVGYMARTALALRWLLSDRLFSRMIMTQF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9139899; 9252185 [H]