Click here to switch to the map view.

The map label for this gene is cycH [H]

Identifier: 99080809

GI number: 99080809

Start: 1034555

End: 1035793

Strand: Reverse

Name: cycH [H]

Synonym: TM1040_0968

Alternate gene names: 99080809

Gene position: 1035793-1034555 (Counterclockwise)

Preceding gene: 99080819

Following gene: 99080808

Centisome position: 32.36

GC content: 64.16

Gene sequence:

>1239_bases
ATGGCTTTTTGGATTTTGACCGGCGCGGTGACCCTGACCCTTGCGGTAATTCTGGCGCTTGTGGTGCTACGCAATCGCAA
TGGCGCGGGAGAGCCGGCTGCGGCCTATGATTTGCGGGTCTATCGCCAGCAATTGAAGGATCTGGACAAAGATGTCGCGC
GCGGCGTTGTGAGCGACGCCGATGCCGACCGGCTGCGGACCGAGATTTCGCGCCGGATCCTGTCTGCGGATGCACAGCTT
CAGGCCGCCGAAGCCGGAGAAGATCAGCCCAATGGCCCCAGTCGCGTGATGGCGGTTGTGTTGATTGCGGTGATCGTCCT
TGGCACGGGTGGGCTGTATTGGCAGTTGGGCGCGCCCGGCTACGGCGATTATGGGCTGCGCGAGCGCATCGCGCTCGCCA
AGACGCGCGCCGAGACACGTCCGAGCCAGTCCGAGTTCGAAGCCCGCATGCCAGCCCCCCCCGCCCCAGAGGCTGATGCC
AGTTACCTCAACCTTGTGGAGCAGCTGCGCAGTGCGACCGCAGATCGGCCAGACGATTTGCAGGGACAGGCGTTGCTTGC
GCAGCACGAAGCGCGGCTGGGCAATTTCAAGGCCGCCTATGAGGCAAAAGCGCGGTATATCGCGCTTTTGGATACCGCCC
CCGACCCGCGCGACCTGATCGATCAGGCAGAGCTGCAGGTGATGGCGGCTGGCGGATATGTATCCCCCGAGAGTGAGGCG
CTGCTGGAGCAGGCTTTGTCGCAGGTGCCGGAAGACGGGCGCGCGCGGTATTATTACGGCCTGATGATGGGGCAGAACGG
GCGTCCCGATCGCGGCTATCGGATCTGGGCGGAGACGCTCAAGGATGGTCCTGCCGGCGCGCCGTGGATCCGCGCGATCC
AAGCCCAGATCCCGGAGATGGCAGGGCTTGCCGGGGTTGCCTACCAGCCGATCCCACCCGGTGGCGAAAGTGCCCGGCTC
AACGGCCCAAGCGCCGAGCAGGTTGAGGCGATGCAGGATCTCTCCCCCGAGGAACGCCAGGAAATGATCGAAGGAATGGT
TTCGGGCCTTGCGACACGCCTCGCCGAAGAAGGTGGAAGCCCGGCGGAATGGGCCCAGCTGATCACGGCGCTTGGTGTGC
TGGGACGCATGGAAGAGGCGCGCGTGATCTATTTGGAAGCCCAGCAGCAATTTGCCGGGGATGATGGTGCTCTTGACATC
CTAGGCGCCGCCTTTGCCCCATTGGAGGCCACCCGATGA

Upstream 100 bases:

>100_bases
CGGCGCGCCGATCTGTGCCAAGGCGAGACAGCGGGTCGCAGCAATAGGGCTTTTTTCCGCGCCTCAGCACCTATAGATGG
GACCAAACGGCGGAGAGACG

Downstream 100 bases:

>100_bases
TACACGACGCGTTTGAAGACTTCGCCGCCGCCCTGCCGCAGATGACCGCGCTTGTGGGGCTCGATTTCGGGGAGAAAACC
ATTGGCGTGGCGGTCTCGGA

Product: cytochrome c-type biogenesis protein CycH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MAFWILTGAVTLTLAVILALVVLRNRNGAGEPAAAYDLRVYRQQLKDLDKDVARGVVSDADADRLRTEISRRILSADAQL
QAAEAGEDQPNGPSRVMAVVLIAVIVLGTGGLYWQLGAPGYGDYGLRERIALAKTRAETRPSQSEFEARMPAPPAPEADA
SYLNLVEQLRSATADRPDDLQGQALLAQHEARLGNFKAAYEAKARYIALLDTAPDPRDLIDQAELQVMAAGGYVSPESEA
LLEQALSQVPEDGRARYYYGLMMGQNGRPDRGYRIWAETLKDGPAGAPWIRAIQAQIPEMAGLAGVAYQPIPPGGESARL
NGPSAEQVEAMQDLSPEERQEMIEGMVSGLATRLAEEGGSPAEWAQLITALGVLGRMEEARVIYLEAQQQFAGDDGALDI
LGAAFAPLEATR

Sequences:

>Translated_412_residues
MAFWILTGAVTLTLAVILALVVLRNRNGAGEPAAAYDLRVYRQQLKDLDKDVARGVVSDADADRLRTEISRRILSADAQL
QAAEAGEDQPNGPSRVMAVVLIAVIVLGTGGLYWQLGAPGYGDYGLRERIALAKTRAETRPSQSEFEARMPAPPAPEADA
SYLNLVEQLRSATADRPDDLQGQALLAQHEARLGNFKAAYEAKARYIALLDTAPDPRDLIDQAELQVMAAGGYVSPESEA
LLEQALSQVPEDGRARYYYGLMMGQNGRPDRGYRIWAETLKDGPAGAPWIRAIQAQIPEMAGLAGVAYQPIPPGGESARL
NGPSAEQVEAMQDLSPEERQEMIEGMVSGLATRLAEEGGSPAEWAQLITALGVLGRMEEARVIYLEAQQQFAGDDGALDI
LGAAFAPLEATR
>Mature_411_residues
AFWILTGAVTLTLAVILALVVLRNRNGAGEPAAAYDLRVYRQQLKDLDKDVARGVVSDADADRLRTEISRRILSADAQLQ
AAEAGEDQPNGPSRVMAVVLIAVIVLGTGGLYWQLGAPGYGDYGLRERIALAKTRAETRPSQSEFEARMPAPPAPEADAS
YLNLVEQLRSATADRPDDLQGQALLAQHEARLGNFKAAYEAKARYIALLDTAPDPRDLIDQAELQVMAAGGYVSPESEAL
LEQALSQVPEDGRARYYYGLMMGQNGRPDRGYRIWAETLKDGPAGAPWIRAIQAQIPEMAGLAGVAYQPIPPGGESARLN
GPSAEQVEAMQDLSPEERQEMIEGMVSGLATRLAEEGGSPAEWAQLITALGVLGRMEEARVIYLEAQQQFAGDDGALDIL
GAAFAPLEATR

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44309; Mature: 44177

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFWILTGAVTLTLAVILALVVLRNRNGAGEPAAAYDLRVYRQQLKDLDKDVARGVVSDA
CEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DADRLRTEISRRILSADAQLQAAEAGEDQPNGPSRVMAVVLIAVIVLGTGGLYWQLGAPG
CHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
YGDYGLRERIALAKTRAETRPSQSEFEARMPAPPAPEADASYLNLVEQLRSATADRPDDL
CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
QGQALLAQHEARLGNFKAAYEAKARYIALLDTAPDPRDLIDQAELQVMAAGGYVSPESEA
CCHHHHHHHHHHHCCCHHHHHHCCEEEEEEECCCCHHHHHHHHHEEEEECCCCCCCHHHH
LLEQALSQVPEDGRARYYYGLMMGQNGRPDRGYRIWAETLKDGPAGAPWIRAIQAQIPEM
HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AGLAGVAYQPIPPGGESARLNGPSAEQVEAMQDLSPEERQEMIEGMVSGLATRLAEEGGS
HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PAEWAQLITALGVLGRMEEARVIYLEAQQQFAGDDGALDILGAAFAPLEATR
HHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AFWILTGAVTLTLAVILALVVLRNRNGAGEPAAAYDLRVYRQQLKDLDKDVARGVVSDA
EEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DADRLRTEISRRILSADAQLQAAEAGEDQPNGPSRVMAVVLIAVIVLGTGGLYWQLGAPG
CHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
YGDYGLRERIALAKTRAETRPSQSEFEARMPAPPAPEADASYLNLVEQLRSATADRPDDL
CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
QGQALLAQHEARLGNFKAAYEAKARYIALLDTAPDPRDLIDQAELQVMAAGGYVSPESEA
CCHHHHHHHHHHHCCCHHHHHHCCEEEEEEECCCCHHHHHHHHHEEEEECCCCCCCHHHH
LLEQALSQVPEDGRARYYYGLMMGQNGRPDRGYRIWAETLKDGPAGAPWIRAIQAQIPEM
HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AGLAGVAYQPIPPGGESARLNGPSAEQVEAMQDLSPEERQEMIEGMVSGLATRLAEEGGS
HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PAEWAQLITALGVLGRMEEARVIYLEAQQQFAGDDGALDILGAAFAPLEATR
HHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8231805; 12597275 [H]