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The map label for this gene is yqgF [C]

Identifier: 99080808

GI number: 99080808

Start: 1034085

End: 1034558

Strand: Reverse

Name: yqgF [C]

Synonym: TM1040_0967

Alternate gene names: 99080808

Gene position: 1034558-1034085 (Counterclockwise)

Preceding gene: 99080809

Following gene: 99080807

Centisome position: 32.32

GC content: 60.13

Gene sequence:

>474_bases
ATGATACACGACGCGTTTGAAGACTTCGCCGCCGCCCTGCCGCAGATGACCGCGCTTGTGGGGCTCGATTTCGGGGAGAA
AACCATTGGCGTGGCGGTCTCGGACCGGATCGGCGCCGTGGCAACACCGCTTGAAACCATCCGGCGCAAGAAATTCACGC
TCGACAGCAATCGATTGCTTGAGATCATCGCCGGACGCGACATCAATGGCATTCTACTTGGCCTGCCGCGGAATATGGAT
GGCTCTGAAGGGCCGCGTTGCCAATCCACCCGCGCCTTTGCGCGCAATCTGTCACGGGTCACGGATCTACCAATCGGTTT
CTGGGACGAACGATTGTCGACGGTGGCGGCAGAACGCGCACTGTTGGAGGCCGATACGTCTCGAAAACGTCGCGCAGAGG
TGATCGACCATGTGGCGGCGTCGTATATCCTGCAGGGGGCGCTGGATCGGATGCGCCACATCAGGAGCAGTTAG

Upstream 100 bases:

>100_bases
AGGCGCGCGTGATCTATTTGGAAGCCCAGCAGCAATTTGCCGGGGATGATGGTGCTCTTGACATCCTAGGCGCCGCCTTT
GCCCCATTGGAGGCCACCCG

Downstream 100 bases:

>100_bases
ACCATGACCGATGACGTCTGGAAGCGGCAGGAAATCGAGAGCCCTTGCATCAAACTCTGTGTTATTCAGCCGCAGACGCG
GCTCTGCACCGGCTGCGCCC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MIHDAFEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAGRDINGILLGLPRNMD
GSEGPRCQSTRAFARNLSRVTDLPIGFWDERLSTVAAERALLEADTSRKRRAEVIDHVAASYILQGALDRMRHIRSS

Sequences:

>Translated_157_residues
MIHDAFEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAGRDINGILLGLPRNMD
GSEGPRCQSTRAFARNLSRVTDLPIGFWDERLSTVAAERALLEADTSRKRRAEVIDHVAASYILQGALDRMRHIRSS
>Mature_157_residues
MIHDAFEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAGRDINGILLGLPRNMD
GSEGPRCQSTRAFARNLSRVTDLPIGFWDERLSTVAAERALLEADTSRKRRAEVIDHVAASYILQGALDRMRHIRSS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=132, Percent_Identity=35.6060606060606, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_SILST (Q1GI16)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_612962.1
- ProteinModelPortal:   Q1GI16
- SMR:   Q1GI16
- STRING:   Q1GI16
- GeneID:   4077263
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_0967
- NMPDR:   fig|292414.1.peg.3046
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q1GI16
- ProtClustDB:   PRK00109
- BioCyc:   SSP292414:TM1040_0967-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17317; Mature: 17317

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHDAFEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLL
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
EIIAGRDINGILLGLPRNMDGSEGPRCQSTRAFARNLSRVTDLPIGFWDERLSTVAAERA
HHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLEADTSRKRRAEVIDHVAASYILQGALDRMRHIRSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIHDAFEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLL
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
EIIAGRDINGILLGLPRNMDGSEGPRCQSTRAFARNLSRVTDLPIGFWDERLSTVAAERA
HHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLEADTSRKRRAEVIDHVAASYILQGALDRMRHIRSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA