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The map label for this gene is agmR [H]

Identifier: 99080801

GI number: 99080801

Start: 1026394

End: 1027038

Strand: Reverse

Name: agmR [H]

Synonym: TM1040_0960

Alternate gene names: 99080801

Gene position: 1027038-1026394 (Counterclockwise)

Preceding gene: 99080807

Following gene: 99080799

Centisome position: 32.09

GC content: 58.6

Gene sequence:

>645_bases
ATGAACAGTGTAAACGGGTTTAATATCAATATGCGTATTCTTCTCGCCGACGATCACGATATGGTGCGCGACACGATTTC
TGCCTATCTCGCTTCCGAGGGCGGCGCGCAAATCACTGCGACCACTGATCTGCCTCGCGCCATGAAGGAACTTGAAGACA
ACGGTCCCTTTGACCTGGTGCTTCTGGACTACAATATGCCGGGCATGAACGGGCTCGATGGGCTTCAGCGTGCGCTAAAG
GCCAATGGCGGGCGTGGCGTTGCAATCCTCTCGGGCAGCGCACCGACGCGCACCGCACAGGATGCTTTGGACGCCGGTGC
CATCGGTTTCATCCCCAAGACCATGGGCGCGCAGTCGCTTTTGAATGCGGTGCGTTTCATGAGCGCGGGAGAAATCTATG
TGCCGGTCGAACTGATGCGCGAAGAGGCCTCCGCCCCGGAGCATCCGCTCCTGGCCCAACTCAGCCCCCGCGAGGTCGAA
GTTCTGAGTGGGCTCTGTCGCGGGCAATCCAACAAGGAAATCGCACGCGATCTCAACCTTCAAGAGGTGACGATCAAGCT
GCATGTGCGCACGCTCTGCCGCAAGCTCGACGCAAAGAACCGCACGCAGGCCGCAATGACCGCCAAAGAAGCAGGGTTGT
TCTAA

Upstream 100 bases:

>100_bases
CAACGCAAATTGCGTATTTCACGCAGACGGTCTGTGGCGCGGTCGCGAAATCGTCCTAAAAGTTGATAGAATATAAAGGT
TTCAGGAGGTAGGATCGTGA

Downstream 100 bases:

>100_bases
CCCCGCGCAACCTCTTTGGCGAGGCGGTCAAACCGCACCCCCTATTCGTCTTTTGAAAACGTGACCTCGCTACCGCCAAC
CAGCGGTCGCGTCTCAGTAT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNSVNGFNINMRILLADDHDMVRDTISAYLASEGGAQITATTDLPRAMKELEDNGPFDLVLLDYNMPGMNGLDGLQRALK
ANGGRGVAILSGSAPTRTAQDALDAGAIGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMREEASAPEHPLLAQLSPREVE
VLSGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGLF

Sequences:

>Translated_214_residues
MNSVNGFNINMRILLADDHDMVRDTISAYLASEGGAQITATTDLPRAMKELEDNGPFDLVLLDYNMPGMNGLDGLQRALK
ANGGRGVAILSGSAPTRTAQDALDAGAIGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMREEASAPEHPLLAQLSPREVE
VLSGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGLF
>Mature_214_residues
MNSVNGFNINMRILLADDHDMVRDTISAYLASEGGAQITATTDLPRAMKELEDNGPFDLVLLDYNMPGMNGLDGLQRALK
ANGGRGVAILSGSAPTRTAQDALDAGAIGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMREEASAPEHPLLAQLSPREVE
VLSGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGLF

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=202, Percent_Identity=33.1683168316832, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1786747, Length=187, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1788222, Length=210, Percent_Identity=25.7142857142857, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1787473, Length=209, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1789937, Length=174, Percent_Identity=30.4597701149425, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788712, Length=191, Percent_Identity=26.1780104712042, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790102, Length=196, Percent_Identity=30.1020408163265, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23051; Mature: 23051

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVNGFNINMRILLADDHDMVRDTISAYLASEGGAQITATTDLPRAMKELEDNGPFDLV
CCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCEEEE
LLDYNMPGMNGLDGLQRALKANGGRGVAILSGSAPTRTAQDALDAGAIGFIPKTMGAQSL
EEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCHHCCHHHH
LNAVRFMSAGEIYVPVELMREEASAPEHPLLAQLSPREVEVLSGLCRGQSNKEIARDLNL
HHHHHHHCCCCEEEHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHCCCCCHHHHHCCCE
QEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGLF
EEEEEEHHHHHHHHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNSVNGFNINMRILLADDHDMVRDTISAYLASEGGAQITATTDLPRAMKELEDNGPFDLV
CCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCEEEE
LLDYNMPGMNGLDGLQRALKANGGRGVAILSGSAPTRTAQDALDAGAIGFIPKTMGAQSL
EEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCHHCCHHHH
LNAVRFMSAGEIYVPVELMREEASAPEHPLLAQLSPREVEVLSGLCRGQSNKEIARDLNL
HHHHHHHCCCCEEEHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHCCCCCHHHHHCCCE
QEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGLF
EEEEEEHHHHHHHHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]