| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is surA [H]
Identifier: 99080787
GI number: 99080787
Start: 1008573
End: 1009847
Strand: Reverse
Name: surA [H]
Synonym: TM1040_0946
Alternate gene names: 99080787
Gene position: 1009847-1008573 (Counterclockwise)
Preceding gene: 99080788
Following gene: 99080786
Centisome position: 31.55
GC content: 62.9
Gene sequence:
>1275_bases ATGCAGCAAAACCTAACCTTCCGCCAGATTTCGCTGGCCCTGATCAACTGGACCCGTCGCGCGAGCTACGCAGCAGGTCT GGCGCTTGCCATTGCCGCGGCTGCCCCGGCGGATCTTCAGGCACAGGGGCTGTTCTCGCCCGCGATCACCGTCAACGAGG ATGTGATCACCACCTATGAACTGGAGCAACGTGCCCTTTTCCTGAGCGTTCTAGGCTCGGTGCAGGGCGATCCGTTTGAA ACCGCTCGCGATGATCTGATCGAGGATCGGCTCAAGCGTCAGGTCATGAAAGACGTGGGCCTGACCCTCAGTGAAGAAGA AGTCACCGAAGGCATGCGCGAGCTTGCGCAGCGTGCCAATCTGACGCTCGAGGAGTTTCTCGCCAGCCTGAACCAGGCCG GTGTCGCCCCGGAAACCGTGCGTGATTTCACCACAGCAGGTCTTGGCTGGCGCGAGTATGTCCGCGGCCGGTTCCTGTCG CAGGCCCGCCCCTCCGAAGCCGAAATTGATCGTGCCATGGGCACCGCTGGCTCCGGCAGCGTTCAGGTGCTGCTGTCTGA AATCATCCTTCCCCTCACGCAAGAAAACGCCGCACAGGTTCAGGATCTTGCGATCCAGATCTCCGAACTGACCCGCGCCG AGGCCTTCGCCGCCTCCGCGGCACAATTCTCTGCCGCCGACAGCCGCACTGACGGCGGACGCCTGCCGTGGATGTCGCTC TCTCGCCTGCCTCCGCAGCTGCAAGAAGTGGTCCTCGGGCTGGAACCCGGCGAGATCACCCAGCCCTTGCCCATGCAGGG TGCCATCGCGATCTTCCGCATGCGTGGTCTACGCGAGGTGGACGGGCGCAGCGCGACCTACGCCGCGATTGATTACGCCA CCTACCGCATCCCCGGTGGGCGCAGCCCCGAGGCGCTTGCGCGCGCCACTGAAATCCGCGACGAGATCGACACCTGCGAT GACCTCTATGGCATCAACAAAGGGCAAGACCCCGATCGTCTGTTCCGCGGCAGCGAGGCCCCCGGTGCAATCCCACAGGA TATCGCGCTGGAACTCTCTCGCTTCGACGAGAATGAATCCTCCGCGACGCTGACCCGTGACAACGGCCAGACGCTTCTGT TTGTGATGCTCTGCGGCCGCACCAGCGAAGTTGTCGCCTCGCAGGAAAACGCCCGTGTCGCTGTGGCCAACGCTCTTGTG CAACAGCGCCTGAATGAACTCGCCGAGGCCCATGTCGAACAGCTGAAGGCCAACGCCCGGATCGATTTCCAATGA
Upstream 100 bases:
>100_bases ATACCTCGACGACAAGTGTTGAGCCATCAACGGATTTCGGATTTACACTGTCGCTCAACGGCTTTTCCGTCAAAAGCGGC AACACAACAAGCAGGCGATC
Downstream 100 bases:
>100_bases CAGGCGCGCCGCAGGTCATTGCTCTCTCCTGCGGCGAACCTGCCGGGATCGGCCCGGAAATCGCTGTCGCCGCATGGGAT CAACTGCGCGCGGACTGCCC
Product: PpiC-type peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: Peptidyl-prolyl cis-trans isomerase surA; PPIase surA; Rotamase surA [H]
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MQQNLTFRQISLALINWTRRASYAAGLALAIAAAAPADLQAQGLFSPAITVNEDVITTYELEQRALFLSVLGSVQGDPFE TARDDLIEDRLKRQVMKDVGLTLSEEEVTEGMRELAQRANLTLEEFLASLNQAGVAPETVRDFTTAGLGWREYVRGRFLS QARPSEAEIDRAMGTAGSGSVQVLLSEIILPLTQENAAQVQDLAIQISELTRAEAFAASAAQFSAADSRTDGGRLPWMSL SRLPPQLQEVVLGLEPGEITQPLPMQGAIAIFRMRGLREVDGRSATYAAIDYATYRIPGGRSPEALARATEIRDEIDTCD DLYGINKGQDPDRLFRGSEAPGAIPQDIALELSRFDENESSATLTRDNGQTLLFVMLCGRTSEVVASQENARVAVANALV QQRLNELAEAHVEQLKANARIDFQ
Sequences:
>Translated_424_residues MQQNLTFRQISLALINWTRRASYAAGLALAIAAAAPADLQAQGLFSPAITVNEDVITTYELEQRALFLSVLGSVQGDPFE TARDDLIEDRLKRQVMKDVGLTLSEEEVTEGMRELAQRANLTLEEFLASLNQAGVAPETVRDFTTAGLGWREYVRGRFLS QARPSEAEIDRAMGTAGSGSVQVLLSEIILPLTQENAAQVQDLAIQISELTRAEAFAASAAQFSAADSRTDGGRLPWMSL SRLPPQLQEVVLGLEPGEITQPLPMQGAIAIFRMRGLREVDGRSATYAAIDYATYRIPGGRSPEALARATEIRDEIDTCD DLYGINKGQDPDRLFRGSEAPGAIPQDIALELSRFDENESSATLTRDNGQTLLFVMLCGRTSEVVASQENARVAVANALV QQRLNELAEAHVEQLKANARIDFQ >Mature_424_residues MQQNLTFRQISLALINWTRRASYAAGLALAIAAAAPADLQAQGLFSPAITVNEDVITTYELEQRALFLSVLGSVQGDPFE TARDDLIEDRLKRQVMKDVGLTLSEEEVTEGMRELAQRANLTLEEFLASLNQAGVAPETVRDFTTAGLGWREYVRGRFLS QARPSEAEIDRAMGTAGSGSVQVLLSEIILPLTQENAAQVQDLAIQISELTRAEAFAASAAQFSAADSRTDGGRLPWMSL SRLPPQLQEVVLGLEPGEITQPLPMQGAIAIFRMRGLREVDGRSATYAAIDYATYRIPGGRSPEALARATEIRDEIDTCD DLYGINKGQDPDRLFRGSEAPGAIPQDIALELSRFDENESSATLTRDNGQTLLFVMLCGRTSEVVASQENARVAVANALV QQRLNELAEAHVEQLKANARIDFQ
Specific function: Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Periplasm. Note=Is capable of associating with the outer membrane (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PpiC domains [H]
Homologues:
None
Paralogues:
None
Copy number: 400 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000297 - InterPro: IPR023058 - InterPro: IPR023034 - InterPro: IPR015391 - InterPro: IPR008880 [H]
Pfam domain/function: PF00639 Rotamase; PF09312 SurA_N [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 46239; Mature: 46239
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQNLTFRQISLALINWTRRASYAAGLALAIAAAAPADLQAQGLFSPAITVNEDVITTYE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEHH LEQRALFLSVLGSVQGDPFETARDDLIEDRLKRQVMKDVGLTLSEEEVTEGMRELAQRAN HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC LTLEEFLASLNQAGVAPETVRDFTTAGLGWREYVRGRFLSQARPSEAEIDRAMGTAGSGS CCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCH VQVLLSEIILPLTQENAAQVQDLAIQISELTRAEAFAASAAQFSAADSRTDGGRLPWMSL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH SRLPPQLQEVVLGLEPGEITQPLPMQGAIAIFRMRGLREVDGRSATYAAIDYATYRIPGG HHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCEEEEEEEEEEECCCC RSPEALARATEIRDEIDTCDDLYGINKGQDPDRLFRGSEAPGAIPQDIALELSRFDENES CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC SATLTRDNGQTLLFVMLCGRTSEVVASQENARVAVANALVQQRLNELAEAHVEQLKANAR CCEEEECCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IDFQ CCCC >Mature Secondary Structure MQQNLTFRQISLALINWTRRASYAAGLALAIAAAAPADLQAQGLFSPAITVNEDVITTYE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEHH LEQRALFLSVLGSVQGDPFETARDDLIEDRLKRQVMKDVGLTLSEEEVTEGMRELAQRAN HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC LTLEEFLASLNQAGVAPETVRDFTTAGLGWREYVRGRFLSQARPSEAEIDRAMGTAGSGS CCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCH VQVLLSEIILPLTQENAAQVQDLAIQISELTRAEAFAASAAQFSAADSRTDGGRLPWMSL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH SRLPPQLQEVVLGLEPGEITQPLPMQGAIAIFRMRGLREVDGRSATYAAIDYATYRIPGG HHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCEEEEEEEEEEECCCC RSPEALARATEIRDEIDTCDDLYGINKGQDPDRLFRGSEAPGAIPQDIALELSRFDENES CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC SATLTRDNGQTLLFVMLCGRTSEVVASQENARVAVANALVQQRLNELAEAHVEQLKANAR CCEEEECCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IDFQ CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA