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The map label for this gene is ihfA

Identifier: 99080754

GI number: 99080754

Start: 975623

End: 975925

Strand: Reverse

Name: ihfA

Synonym: TM1040_0913

Alternate gene names: 99080754

Gene position: 975925-975623 (Counterclockwise)

Preceding gene: 99080755

Following gene: 99080753

Centisome position: 30.49

GC content: 55.78

Gene sequence:

>303_bases
ATGACTGAAAAAACGATTACGAGAATGGATCTGAGCGAGGCGGTGTTTCGCGAAGTTGGTCTGTCACGCAACGAAAGCGC
GCAGCTCGTCGAGAGCATGCTTCAGCACATGTCGGACGCTTTGGTGCGCGGCGAACAGGTAAAGATCTCCTCTTTTGGAA
CCTTCAGCGTGCGCGATAAATCCGCCCGTGTCGGACGCAATCCCAAAACCGGTGAAGAAGTGCCGATCCAGCCCCGCCGT
GTGCTGACCTTCCGCCCTTCGCACCTGATGAAAGATCGCGTCGCGGACGGCAACAAAAGTTAA

Upstream 100 bases:

>100_bases
TTTGCGGTGGTAATGCGGGGGAAACCGCACCTTCCAATTCATTGATATTGACAGGGAAATTCCTGACCTCCTATTGTTTT
GAGAAACAACGGGGATGGCT

Downstream 100 bases:

>100_bases
CCGTCTTCGCCGATCATACCAAATGAAGCACCGGCCCCCGTTTGCGGGGCCATACCCATATGCGCAAGACCGATGCGCCG
CAGCCAATAAAGGGTCGCCC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTEKTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPKTGEEVPIQPRR
VLTFRPSHLMKDRVADGNKS

Sequences:

>Translated_100_residues
MTEKTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPKTGEEVPIQPRR
VLTFRPSHLMKDRVADGNKS
>Mature_99_residues
TEKTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPKTGEEVPIQPRRV
LTFRPSHLMKDRVADGNKS

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=93, Percent_Identity=48.3870967741936, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1787141, Length=65, Percent_Identity=41.5384615384615, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1786644, Length=74, Percent_Identity=33.7837837837838, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=31.4606741573034, Blast_Score=59, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_SILST (Q1GI70)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_612908.1
- ProteinModelPortal:   Q1GI70
- SMR:   Q1GI70
- STRING:   Q1GI70
- GeneID:   4076283
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_0913
- NMPDR:   fig|292414.1.peg.2994
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   RDKSARV
- PhylomeDB:   Q1GI70
- ProtClustDB:   PRK00285
- BioCyc:   SSP292414:TM1040_0913-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11261; Mature: 11130

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDK
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCC
SARVGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNKS
CHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCC
>Mature Secondary Structure 
TEKTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDK
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCC
SARVGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNKS
CHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA