Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080710
Identifier: 99080710
GI number: 99080710
Start: 926009
End: 927346
Strand: Reverse
Name: 99080710
Synonym: TM1040_0869
Alternate gene names: NA
Gene position: 927346-926009 (Counterclockwise)
Preceding gene: 99080713
Following gene: 99080705
Centisome position: 28.97
GC content: 62.86
Gene sequence:
>1338_bases ATGAAATGCGCCATTGCGCCCGACGGTGCAACGGCGGATGCTGTGGCGATGACCCACGACATTGCATTCACCTTTGAGAC CCTGCCCGAGGCGGCGCGCCGGCATATTCGCGTGTTTCAGATCCATCAGTTTCTGGACCGCTTTGCCATGGGGCTCACGG TGGCGGTGGTTGCGCTTGCGCTTACGGATCGGGGTATGGACCTGTTCCAGATCTCGCTGCTTTTTGGGATCTACTCGCTG ACGACCATGACGACGGAACTTCCGTTTGGCGGCTTGGCCGACAGTATCGGGCGCAAGCCCGTGTTTCTCGGGGCTGTGGG CGCCAGTTTGATGGCGCTGGCCCTGTTTCTGCTGTCGCGCGATTTTGCTGTGCTGGCGATGTCCTTCGCCTTTGTCGGCG TGGGGCGGGCCTTGCGGTCTGGCACGCTTGATGCGTGGTTTGTTGAGGGGTTCAGGGCCCATGCCCCCGACGTGGATGTG CAGCCCGCACTGGCCAAGGCGCAATGGGCCAATGCGATGGGGCTTGCCGTGGGGGCGGTTATGGGTGGTCTGTTGCCGGA CGCCGTTGGCACCCTTGGCATCAGGTATGGGATCAGCATTTATGATGTGTCCTACGCGGCAAGCTTTGCCGTCATGGTCG GCGTGTTTGCCTACACGCTTCGCGTCATCATTGAGCCACCGCGCCCACGAGATGCGCGGGCGCTCCAGCAGGGCTTTGTA CGCGTGCCTGCGGTGATTGCAGAGGCCGGCGCCCTGGCGCTGAAGCATCCGGTGCTCTCGCTGCTGTTGACGGCTTTGGC GCTGTTCCTGATGGCGACCAACCCGGTCGAGGTGCTCTGGCCGACCTATGCCAAACCAATGCTGGACGCGGACTATGCCA ACACCCTCATTGGGGCACTGACGGCGGGGTACTTCTTTGCGATCGCCATTGGCGCGGGGATATCGCCCCGGATCAGTCGA CTGTTCAGGCGGCGCTCTGCGGTCGTGCTGGCCGCGCTTTTTGCCTGTCTTGCGGCTGCGCAGGTCGTCCTTGCGATCCA AGGCAGTGTCGCTGGTTTTGTCTGCATGTTTCTGATCTACGCGGTCCTGCTGGGCGCAAGCGAGACACCCGCAAGCAGCC TGTTGCACGCGTGTGTGGCGGACCGTCAGCGCTCCACCATGCTGTCGCTGCGCTCTTTGATCCAGCAGCTTGGGGCGGCG GTTGGGCTGCTAATGGCTGGAGGCCTTGCTGAGATCTACACGACCTCGCTCGCCTGGATCATTGGGGCGGTGTTCCTGCT GATTGCGGTGGGGCTGTGCCTGATCTTGGCCAAACGCCTCGCGGGTTCCGGGCGCTAG
Upstream 100 bases:
>100_bases AGCCTAGGCTGCGGATAACGGTCTGAAAAGACCCTAAAATTCCGCACCTTTTTCATGCGCATCAAGGACAGCGCCCGACA CCACCCAAGAGCGCCCACGC
Downstream 100 bases:
>100_bases CGCATCCGCGTCGGGGTGACGTCCAAAACCCGCCCCCAATCCCAGACAAAAAACCCCTGACCAAACGGTCAGGGGCCTTG TTCAACGAATGATCTTTGTG
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Transporter; Transporter Facilitator Family; Facilitator Superfamily Transporter; Facilitator Superfamily Transporter Permease; Facilitator Superfamily Permease
Number of amino acids: Translated: 445; Mature: 445
Protein sequence:
>445_residues MKCAIAPDGATADAVAMTHDIAFTFETLPEAARRHIRVFQIHQFLDRFAMGLTVAVVALALTDRGMDLFQISLLFGIYSL TTMTTELPFGGLADSIGRKPVFLGAVGASLMALALFLLSRDFAVLAMSFAFVGVGRALRSGTLDAWFVEGFRAHAPDVDV QPALAKAQWANAMGLAVGAVMGGLLPDAVGTLGIRYGISIYDVSYAASFAVMVGVFAYTLRVIIEPPRPRDARALQQGFV RVPAVIAEAGALALKHPVLSLLLTALALFLMATNPVEVLWPTYAKPMLDADYANTLIGALTAGYFFAIAIGAGISPRISR LFRRRSAVVLAALFACLAAAQVVLAIQGSVAGFVCMFLIYAVLLGASETPASSLLHACVADRQRSTMLSLRSLIQQLGAA VGLLMAGGLAEIYTTSLAWIIGAVFLLIAVGLCLILAKRLAGSGR
Sequences:
>Translated_445_residues MKCAIAPDGATADAVAMTHDIAFTFETLPEAARRHIRVFQIHQFLDRFAMGLTVAVVALALTDRGMDLFQISLLFGIYSL TTMTTELPFGGLADSIGRKPVFLGAVGASLMALALFLLSRDFAVLAMSFAFVGVGRALRSGTLDAWFVEGFRAHAPDVDV QPALAKAQWANAMGLAVGAVMGGLLPDAVGTLGIRYGISIYDVSYAASFAVMVGVFAYTLRVIIEPPRPRDARALQQGFV RVPAVIAEAGALALKHPVLSLLLTALALFLMATNPVEVLWPTYAKPMLDADYANTLIGALTAGYFFAIAIGAGISPRISR LFRRRSAVVLAALFACLAAAQVVLAIQGSVAGFVCMFLIYAVLLGASETPASSLLHACVADRQRSTMLSLRSLIQQLGAA VGLLMAGGLAEIYTTSLAWIIGAVFLLIAVGLCLILAKRLAGSGR >Mature_445_residues MKCAIAPDGATADAVAMTHDIAFTFETLPEAARRHIRVFQIHQFLDRFAMGLTVAVVALALTDRGMDLFQISLLFGIYSL TTMTTELPFGGLADSIGRKPVFLGAVGASLMALALFLLSRDFAVLAMSFAFVGVGRALRSGTLDAWFVEGFRAHAPDVDV QPALAKAQWANAMGLAVGAVMGGLLPDAVGTLGIRYGISIYDVSYAASFAVMVGVFAYTLRVIIEPPRPRDARALQQGFV RVPAVIAEAGALALKHPVLSLLLTALALFLMATNPVEVLWPTYAKPMLDADYANTLIGALTAGYFFAIAIGAGISPRISR LFRRRSAVVLAALFACLAAAQVVLAIQGSVAGFVCMFLIYAVLLGASETPASSLLHACVADRQRSTMLSLRSLIQQLGAA VGLLMAGGLAEIYTTSLAWIIGAVFLLIAVGLCLILAKRLAGSGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46898; Mature: 46898
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: PS00079 MULTICOPPER_OXIDASE1 ; PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCAIAPDGATADAVAMTHDIAFTFETLPEAARRHIRVFQIHQFLDRFAMGLTVAVVALA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTDRGMDLFQISLLFGIYSLTTMTTELPFGGLADSIGRKPVFLGAVGASLMALALFLLSR HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEHHHHHHHHHHHHHHHHHC DFAVLAMSFAFVGVGRALRSGTLDAWFVEGFRAHAPDVDVQPALAKAQWANAMGLAVGAV CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH MGGLLPDAVGTLGIRYGISIYDVSYAASFAVMVGVFAYTLRVIIEPPRPRDARALQQGFV HHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH RVPAVIAEAGALALKHPVLSLLLTALALFLMATNPVEVLWPTYAKPMLDADYANTLIGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHCCCCCCHHHHHHHHHHH TAGYFFAIAIGAGISPRISRLFRRRSAVVLAALFACLAAAQVVLAIQGSVAGFVCMFLIY HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH AVLLGASETPASSLLHACVADRQRSTMLSLRSLIQQLGAAVGLLMAGGLAEIYTTSLAWI HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH IGAVFLLIAVGLCLILAKRLAGSGR HHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKCAIAPDGATADAVAMTHDIAFTFETLPEAARRHIRVFQIHQFLDRFAMGLTVAVVALA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTDRGMDLFQISLLFGIYSLTTMTTELPFGGLADSIGRKPVFLGAVGASLMALALFLLSR HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEHHHHHHHHHHHHHHHHHC DFAVLAMSFAFVGVGRALRSGTLDAWFVEGFRAHAPDVDVQPALAKAQWANAMGLAVGAV CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH MGGLLPDAVGTLGIRYGISIYDVSYAASFAVMVGVFAYTLRVIIEPPRPRDARALQQGFV HHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH RVPAVIAEAGALALKHPVLSLLLTALALFLMATNPVEVLWPTYAKPMLDADYANTLIGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHCCCCCCHHHHHHHHHHH TAGYFFAIAIGAGISPRISRLFRRRSAVVLAALFACLAAAQVVLAIQGSVAGFVCMFLIY HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH AVLLGASETPASSLLHACVADRQRSTMLSLRSLIQQLGAAVGLLMAGGLAEIYTTSLAWI HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH IGAVFLLIAVGLCLILAKRLAGSGR HHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA