Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080629
Identifier: 99080629
GI number: 99080629
Start: 840662
End: 841195
Strand: Reverse
Name: 99080629
Synonym: TM1040_0788
Alternate gene names: NA
Gene position: 841195-840662 (Counterclockwise)
Preceding gene: 99080630
Following gene: 99080628
Centisome position: 26.28
GC content: 51.12
Gene sequence:
>534_bases TTGCCCATCCAGTATTCGCTCGCGGATCGAATTTTTCAAACCTCAAAAGACTTATTGCCTCCATTTGAGTGGAAACCAAC GACCAATGGAAGCGGCCATGAGCACCGTCGAGGCATAGAATGTCGGGTCAGGATCGGTGGGTCCATGCCGAGAGGCGTGT TCTTTCGAATTGCATTGTTTCCTCGCTTTCGACTGCGTGCGACATTCCAACTCGAGTGCGAAAGAGATTCTGGCCGCGCT CACATACCCCTGTATCGGCTAGATGTTGATCCAGCATCAGCCCATCAAAATAAGCTCTTCGGGCCTCCAGAGGTTCATGG AATATTTTTGCCTCAAGGTAAGAACCATGAGCACATATTCTATGACAGCCTGCGAGAGGATGGCGGGCTAAGGTTGCACG GCGCAGTGCAAGCAAGACCGGTGGAGGCGGACTTTACAGAATTTTCTGAGGCGCTTGCTTATGTCTGTGATACACTCAAA ATCAATAACCGAGGCGATCTTCCTCCTCCTGGCGATCAAGGCGTTCTGCTGTGA
Upstream 100 bases:
>100_bases ACATGTGGAACGTGCGCCTAAAGTGGGCCGCCCGCGTGCGACTGCACTGGCCTGCGGAGTTTGCGAGGAAGAAATAGACC TTTAAGAGAAGAGATTAAGT
Downstream 100 bases:
>100_bases ATGTGATCAAAGCTGACGAAATCCTAACTGCCCGCACAATCGAGGCAATCAACCGCTTGAGCAGCGTAACTCAGGAGGCT GACAAGGTACTCGCACACGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MPIQYSLADRIFQTSKDLLPPFEWKPTTNGSGHEHRRGIECRVRIGGSMPRGVFFRIALFPRFRLRATFQLECERDSGRA HIPLYRLDVDPASAHQNKLFGPPEVHGIFLPQGKNHEHIFYDSLREDGGLRLHGAVQARPVEADFTEFSEALAYVCDTLK INNRGDLPPPGDQGVLL
Sequences:
>Translated_177_residues MPIQYSLADRIFQTSKDLLPPFEWKPTTNGSGHEHRRGIECRVRIGGSMPRGVFFRIALFPRFRLRATFQLECERDSGRA HIPLYRLDVDPASAHQNKLFGPPEVHGIFLPQGKNHEHIFYDSLREDGGLRLHGAVQARPVEADFTEFSEALAYVCDTLK INNRGDLPPPGDQGVLL >Mature_176_residues PIQYSLADRIFQTSKDLLPPFEWKPTTNGSGHEHRRGIECRVRIGGSMPRGVFFRIALFPRFRLRATFQLECERDSGRAH IPLYRLDVDPASAHQNKLFGPPEVHGIFLPQGKNHEHIFYDSLREDGGLRLHGAVQARPVEADFTEFSEALAYVCDTLKI NNRGDLPPPGDQGVLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20045; Mature: 19914
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIQYSLADRIFQTSKDLLPPFEWKPTTNGSGHEHRRGIECRVRIGGSMPRGVFFRIALF CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEC PRFRLRATFQLECERDSGRAHIPLYRLDVDPASAHQNKLFGPPEVHGIFLPQGKNHEHIF CCEEEEEEEEEEEECCCCCEECEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCEEE YDSLREDGGLRLHGAVQARPVEADFTEFSEALAYVCDTLKINNRGDLPPPGDQGVLL EECCCCCCCEEEEECEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCC >Mature Secondary Structure PIQYSLADRIFQTSKDLLPPFEWKPTTNGSGHEHRRGIECRVRIGGSMPRGVFFRIALF CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEC PRFRLRATFQLECERDSGRAHIPLYRLDVDPASAHQNKLFGPPEVHGIFLPQGKNHEHIF CCEEEEEEEEEEEECCCCCEECEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCEEE YDSLREDGGLRLHGAVQARPVEADFTEFSEALAYVCDTLKINNRGDLPPPGDQGVLL EECCCCCCCEEEEECEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA