Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080625
Identifier: 99080625
GI number: 99080625
Start: 837950
End: 838672
Strand: Reverse
Name: 99080625
Synonym: TM1040_0784
Alternate gene names: NA
Gene position: 838672-837950 (Counterclockwise)
Preceding gene: 99080626
Following gene: 99080624
Centisome position: 26.2
GC content: 59.34
Gene sequence:
>723_bases ATGAACGAAGTGACGCAGATCCGCCATCAAGATGACCAGCTTCCGGCTGACCCGATGGTATCCATGATCGAGCGGGTTGC TACGGACCCGAATGCAGACATCGACAAGCTGGAAAGAATGCTTGAGATGAAAGAGCGCCACGACGCGCAGAACGCGAAGG CCGCGTTTTCCTCTGCCTTTGCCCGCGCCTCTGCCGAGTTCCCAACGATCCCGCTGAACGGCAAGGGCCACAACAACAAA CCATACGCCACCCTTGAGGATATCACCAAGCTCACGCGCCCGGTTCTGTCCAAGCACGGCCTTGCGCTGACCTTCTCTGT CGACGTTGGGGATCAGGTCGTCGTGACTGCTAAACTGATGCATGAGCAAGGCCACTCCGAAAGCACCAGCATGGCGCTGC CCCGTGATACCAGCGGCAGCAAGAACGCGGTGCAGGCGGTCGGCTCAACTCAGAAATACGGGCAGCGGTACACCGCGCAA GCGATCCTTGGCCTGTCGCTCGGCATGGATGATGAGGACGATGGAGCAGGCGCGACTGGTCGCGAAACGATCACGCCAAC CCAGATCGAGGAATTGCGCAGGCTGATCGAAAAGGCTGGCGTGACGCCGGAAACTGTCTGCACGGCTGCAAAGGTCGCGG ATCTGTCCAGCATAGCAGTCGCCGACTTCCAGCCGCTCACCAAGAAGCTCAACGCCACGATCAAAGCGAAGGAGGCGAAG TAA
Upstream 100 bases:
>100_bases GTCGGGCGCATCACTGCGCGTCCGCAACTTCCCCGGCGGTGAGGGTTTCCTCCTCCCTATCCCGAAACCGCCGGGGCCTT CTATTCCAAGGAGACACGAC
Downstream 100 bases:
>100_bases TGGAACAAGGGACTCCAGAATGGCATGAGGCCAGACTTGGCCGCGTCACCGCCAGCCGCATTGCTGACGTGATGATGAAT CCGACGACAGCCGGATTCCA
Product: ERF
Products: NA
Alternate protein names: Phage Related Protein; Phage Recombination Protein
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MNEVTQIRHQDDQLPADPMVSMIERVATDPNADIDKLERMLEMKERHDAQNAKAAFSSAFARASAEFPTIPLNGKGHNNK PYATLEDITKLTRPVLSKHGLALTFSVDVGDQVVVTAKLMHEQGHSESTSMALPRDTSGSKNAVQAVGSTQKYGQRYTAQ AILGLSLGMDDEDDGAGATGRETITPTQIEELRRLIEKAGVTPETVCTAAKVADLSSIAVADFQPLTKKLNATIKAKEAK
Sequences:
>Translated_240_residues MNEVTQIRHQDDQLPADPMVSMIERVATDPNADIDKLERMLEMKERHDAQNAKAAFSSAFARASAEFPTIPLNGKGHNNK PYATLEDITKLTRPVLSKHGLALTFSVDVGDQVVVTAKLMHEQGHSESTSMALPRDTSGSKNAVQAVGSTQKYGQRYTAQ AILGLSLGMDDEDDGAGATGRETITPTQIEELRRLIEKAGVTPETVCTAAKVADLSSIAVADFQPLTKKLNATIKAKEAK >Mature_240_residues MNEVTQIRHQDDQLPADPMVSMIERVATDPNADIDKLERMLEMKERHDAQNAKAAFSSAFARASAEFPTIPLNGKGHNNK PYATLEDITKLTRPVLSKHGLALTFSVDVGDQVVVTAKLMHEQGHSESTSMALPRDTSGSKNAVQAVGSTQKYGQRYTAQ AILGLSLGMDDEDDGAGATGRETITPTQIEELRRLIEKAGVTPETVCTAAKVADLSSIAVADFQPLTKKLNATIKAKEAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25900; Mature: 25900
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEVTQIRHQDDQLPADPMVSMIERVATDPNADIDKLERMLEMKERHDAQNAKAAFSSAF CCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH ARASAEFPTIPLNGKGHNNKPYATLEDITKLTRPVLSKHGLALTFSVDVGDQVVVTAKLM HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEHHHHHH HEQGHSESTSMALPRDTSGSKNAVQAVGSTQKYGQRYTAQAILGLSLGMDDEDDGAGATG HHCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC RETITPTQIEELRRLIEKAGVTPETVCTAAKVADLSSIAVADFQPLTKKLNATIKAKEAK CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC >Mature Secondary Structure MNEVTQIRHQDDQLPADPMVSMIERVATDPNADIDKLERMLEMKERHDAQNAKAAFSSAF CCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH ARASAEFPTIPLNGKGHNNKPYATLEDITKLTRPVLSKHGLALTFSVDVGDQVVVTAKLM HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEHHHHHH HEQGHSESTSMALPRDTSGSKNAVQAVGSTQKYGQRYTAQAILGLSLGMDDEDDGAGATG HHCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC RETITPTQIEELRRLIEKAGVTPETVCTAAKVADLSSIAVADFQPLTKKLNATIKAKEAK CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA