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The map label for this gene is intD [H]

Identifier: 99080617

GI number: 99080617

Start: 832173

End: 833177

Strand: Reverse

Name: intD [H]

Synonym: TM1040_0776

Alternate gene names: 99080617

Gene position: 833177-832173 (Counterclockwise)

Preceding gene: 99080618

Following gene: 99080613

Centisome position: 26.03

GC content: 58.81

Gene sequence:

>1005_bases
ATGCCAGACATCAGCATCGGACGTTTCAGGGGCGGATTCTGCGTCTATTGGCATGAAGGTGGCAAGCGAAGACGTTATAG
CCTTAAGGCACGCACCCGAGAGGAAGCCGAGCCAGAAGCGATAGATGTCTACCGGCGCGAGACACTCGACCAACGCCGGG
GAAGAGACACGGTTGCTGACATCTGGGAGGCTTACCGCCAAGACCTTGGAGAAAAGCCCACAGCCAAGACGATGGGCTAT
ACTGGGAAGGCTGTTCTCGCTCACTTCGGTGCATATCGGCCCGATCAGATCACCACGTCCCTCTGCCGCAAGTATGTGAC
CAATCGCACTGCCGAGGGTAAATCGCAGGGCACCATTCACACGGAACTAGGCCACCTTCGCAGCGCAATGCGCTTTGCCG
TGAAGGAGCGGATCATCGACAAGGCCCCATCCATCGAGCGCCCGGCCAAGCCGACGCCAAAAGAACGGTATCTCGAAAAG
GAAGAAATCGCGGCCCTGATCGACGCGGCATCCGCGCCACATATCGCCCTAGCTATCCACCTGCTCTTCGCAACTGCCGG
GCGGATCGGTGCCGTTCTGGACCTGACATGGGACCGGGTAGACTTCCAGCGCGGGATCATCAATCTGCGCCTTGACGACT
CGAAGACCCGCAAGGGCCGTGCCATTGTCCCGATGAACTCCGGGATCCGGGCCGCGCTCCAAACCGCTCATGACGCCGCA
CTCAGCGACTATGTGGTCGAATATGCTGGCGGCAAGGTGAAGAACATTCGGAAAGGGTTTGAGGCGGCCTGCCGTAGAGC
CGAACTTGACGGAGTGACCCTGCACACGATTCGGCATTCCAGCGCGGTTGCTATGGTATCAAACGGCGTTCCGCTGGAGA
AAGTTGCGCAGTACCTAGGGCACTCCAATGTTGCCATCACCTACCAGACGTACGCGAGATTCGCGCCCGATCACCTGCAG
GATGCAGCTGAGATCCTGGACTTCGTTCAAATCAGGGAGGCATGA

Upstream 100 bases:

>100_bases
CTACCACTATTCGAAATATGTGCCTGCAAGGCGAATTAAAACACTTCCGACTGGGACGCCTATACAGAATCCCAGCGACT
GTGGTGGAGGAAATGGAGCA

Downstream 100 bases:

>100_bases
GGGCTTGCTGGCCTAGGTTCAATGAACCGATGGGCACTTTGTAAAATCAGCTTAAGTCATTGATTTAATGGTGGGTGATA
AGAGATTTGAACTCCTGACA

Product: phage integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MPDISIGRFRGGFCVYWHEGGKRRRYSLKARTREEAEPEAIDVYRRETLDQRRGRDTVADIWEAYRQDLGEKPTAKTMGY
TGKAVLAHFGAYRPDQITTSLCRKYVTNRTAEGKSQGTIHTELGHLRSAMRFAVKERIIDKAPSIERPAKPTPKERYLEK
EEIAALIDAASAPHIALAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTRKGRAIVPMNSGIRAALQTAHDAA
LSDYVVEYAGGKVKNIRKGFEAACRRAELDGVTLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAITYQTYARFAPDHLQ
DAAEILDFVQIREA

Sequences:

>Translated_334_residues
MPDISIGRFRGGFCVYWHEGGKRRRYSLKARTREEAEPEAIDVYRRETLDQRRGRDTVADIWEAYRQDLGEKPTAKTMGY
TGKAVLAHFGAYRPDQITTSLCRKYVTNRTAEGKSQGTIHTELGHLRSAMRFAVKERIIDKAPSIERPAKPTPKERYLEK
EEIAALIDAASAPHIALAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTRKGRAIVPMNSGIRAALQTAHDAA
LSDYVVEYAGGKVKNIRKGFEAACRRAELDGVTLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAITYQTYARFAPDHLQ
DAAEILDFVQIREA
>Mature_333_residues
PDISIGRFRGGFCVYWHEGGKRRRYSLKARTREEAEPEAIDVYRRETLDQRRGRDTVADIWEAYRQDLGEKPTAKTMGYT
GKAVLAHFGAYRPDQITTSLCRKYVTNRTAEGKSQGTIHTELGHLRSAMRFAVKERIIDKAPSIERPAKPTPKERYLEKE
EIAALIDAASAPHIALAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTRKGRAIVPMNSGIRAALQTAHDAAL
SDYVVEYAGGKVKNIRKGFEAACRRAELDGVTLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAITYQTYARFAPDHLQD
AAEILDFVQIREA

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=235, Percent_Identity=26.3829787234043, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37358; Mature: 37227

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDISIGRFRGGFCVYWHEGGKRRRYSLKARTREEAEPEAIDVYRRETLDQRRGRDTVAD
CCCCCCEEECCCEEEEEECCCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
IWEAYRQDLGEKPTAKTMGYTGKAVLAHFGAYRPDQITTSLCRKYVTNRTAEGKSQGTIH
HHHHHHHHCCCCCCHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
TELGHLRSAMRFAVKERIIDKAPSIERPAKPTPKERYLEKEEIAALIDAASAPHIALAIH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHH
LLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTRKGRAIVPMNSGIRAALQTAHDAA
HHHHHHCCCCEEEECCHHHHHHHCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHH
LSDYVVEYAGGKVKNIRKGFEAACRRAELDGVTLHTIRHSSAVAMVSNGVPLEKVAQYLG
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCHHHHHHHHC
HSNVAITYQTYARFAPDHLQDAAEILDFVQIREA
CCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PDISIGRFRGGFCVYWHEGGKRRRYSLKARTREEAEPEAIDVYRRETLDQRRGRDTVAD
CCCCCEEECCCEEEEEECCCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
IWEAYRQDLGEKPTAKTMGYTGKAVLAHFGAYRPDQITTSLCRKYVTNRTAEGKSQGTIH
HHHHHHHHCCCCCCHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
TELGHLRSAMRFAVKERIIDKAPSIERPAKPTPKERYLEKEEIAALIDAASAPHIALAIH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHH
LLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTRKGRAIVPMNSGIRAALQTAHDAA
HHHHHHCCCCEEEECCHHHHHHHCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHH
LSDYVVEYAGGKVKNIRKGFEAACRRAELDGVTLHTIRHSSAVAMVSNGVPLEKVAQYLG
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCHHHHHHHHC
HSNVAITYQTYARFAPDHLQDAAEILDFVQIREA
CCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]