Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080613
Identifier: 99080613
GI number: 99080613
Start: 827050
End: 827559
Strand: Reverse
Name: 99080613
Synonym: TM1040_0772
Alternate gene names: NA
Gene position: 827559-827050 (Counterclockwise)
Preceding gene: 99080617
Following gene: 99080612
Centisome position: 25.85
GC content: 54.12
Gene sequence:
>510_bases ATGAAGAGAATTTCTCTCGTGGCACTGATGTGCACACTGTCTGCCTGTATGCAACATGAGCCGCTGGACACCTCGCCGGA GAGCGTGCGTTTTTCCAGCCGCATCGCACAACAAAATGTCTGCGAGTACGCCATTGTGGAAATTCGCACGTTGACGCAAT CGGATGGAACAACCGTCGAAGCCAAGGGTGTGCCCTGCACGATCAACGGTATCGGCTATAGTGCCGGAACCGTGCGCCCC GCGCGGGTCTCGCTGCCCAATTATTTAGGCAAAACTGAGGATGCATCCGTGACCTGCCGTCTGAACGGTGCTGATGTGAA CCAGCAAATTTCTGCCATCAACGCGACCGTTGAAAAAATCAACAGTACGCAATCTTCTGGTGGTGGTTTGGCAGTCGCTC TTGCATTTGCATCGGTGAAAGGTGTGATCAAGTCTTCTCGCGACGCCACCAATGACAAGTTCCGCTACCCGGGCCGGATC GAGGTGAACCTGCAGCCGGTAAAAAAGTGA
Upstream 100 bases:
>100_bases ATTCCATCACGCAATATTGTTCAACCTGTTCATGTTTCAGTAGAACCACTCACCTTCTGCGAGAGGCACTAAAAAATTCA GATAACTACAGGTTTTGGAT
Downstream 100 bases:
>100_bases TACGGCCAGCAGTTTGGCTGATCGCAGCGAGTTTGGGGCCAAGCGCATGCATCGCCCCGCTGCCCTTGCCGGAAGACGCA AAGACAATTGGTATTCAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 169; Mature: 169
Protein sequence:
>169_residues MKRISLVALMCTLSACMQHEPLDTSPESVRFSSRIAQQNVCEYAIVEIRTLTQSDGTTVEAKGVPCTINGIGYSAGTVRP ARVSLPNYLGKTEDASVTCRLNGADVNQQISAINATVEKINSTQSSGGGLAVALAFASVKGVIKSSRDATNDKFRYPGRI EVNLQPVKK
Sequences:
>Translated_169_residues MKRISLVALMCTLSACMQHEPLDTSPESVRFSSRIAQQNVCEYAIVEIRTLTQSDGTTVEAKGVPCTINGIGYSAGTVRP ARVSLPNYLGKTEDASVTCRLNGADVNQQISAINATVEKINSTQSSGGGLAVALAFASVKGVIKSSRDATNDKFRYPGRI EVNLQPVKK >Mature_169_residues MKRISLVALMCTLSACMQHEPLDTSPESVRFSSRIAQQNVCEYAIVEIRTLTQSDGTTVEAKGVPCTINGIGYSAGTVRP ARVSLPNYLGKTEDASVTCRLNGADVNQQISAINATVEKINSTQSSGGGLAVALAFASVKGVIKSSRDATNDKFRYPGRI EVNLQPVKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18022; Mature: 18022
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRISLVALMCTLSACMQHEPLDTSPESVRFSSRIAQQNVCEYAIVEIRTLTQSDGTTVE CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEE AKGVPCTINGIGYSAGTVRPARVSLPNYLGKTEDASVTCRLNGADVNQQISAINATVEKI ECCCEEEEECCCCCCCCCCCCEECCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH NSTQSSGGGLAVALAFASVKGVIKSSRDATNDKFRYPGRIEVNLQPVKK HCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCEECCCEEEEEEEECCC >Mature Secondary Structure MKRISLVALMCTLSACMQHEPLDTSPESVRFSSRIAQQNVCEYAIVEIRTLTQSDGTTVE CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEE AKGVPCTINGIGYSAGTVRPARVSLPNYLGKTEDASVTCRLNGADVNQQISAINATVEKI ECCCEEEEECCCCCCCCCCCCEECCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH NSTQSSGGGLAVALAFASVKGVIKSSRDATNDKFRYPGRIEVNLQPVKK HCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCEECCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA