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The map label for this gene is lpsB [H]

Identifier: 99080563

GI number: 99080563

Start: 779020

End: 780093

Strand: Reverse

Name: lpsB [H]

Synonym: TM1040_0722

Alternate gene names: 99080563

Gene position: 780093-779020 (Counterclockwise)

Preceding gene: 99080564

Following gene: 99080562

Centisome position: 24.37

GC content: 61.45

Gene sequence:

>1074_bases
ATGAGCCAGATCGACCTCAACCAGATCGACGTGATCGCGCCGAACTTTAAGAAACGCTATTCTGGTGTGACTTCTACCGT
GATCCGGCTCGTGCCCATCCAGGCACGCGAGATCGCCATCTGCGCCGCTGCACCGGACTTGCCCGCCGAGGTGCCACAGG
TCAAACCCGGCGCGCTCTGGACCATGGCGCGCAAGGGGCCATCCGGGGCGCGGGTCTGGCACGCCCGACGCAACAATGAA
ATGGTGGCTGGGCTTTTGCTCAAATACCTTTTGGGGAAGCGGCTGAAACTCCTGTTCACCTCGGCTGCGCAACGCCGACA
CACGGGGTTTACCCGCTGGCTGATCCGGCGCATGGACGCGGTGATTGCCACCTCTTCGAGGTCTGCAAGTTATCTGGAAC
GCAATGCAACCGTCATCCGTCACGGTATCGACTGCGACCTGTTCCAACCGGTCGCGGATCGCGCCGCCTTGCGACGCGCG
CTTGATCTTCCCGAGGATGGGCTGCTGGTCGGTTGTTTTGGGCGTATCCGCCCGCAAAAAGGCAATGATCTTTTTGTCAA
AGCGATGATCGCTGCCTGCCGCGCCAATCCAGAGGTGCGTGGCCTGATGATGGGGCGGGCGACAGCGGACAACGCAGAGT
TCCTGCAGGGCCTCAAGGATGAGGTGGCTGCGGCGAGCCTCTCGGATCGCATCCTGTTCCGCGATGAGGTGGCTGTCGAA
GATGTGCCGCGCCATTTCCAGGCGCTTGATCTCTATGTTGCACCACAACGCTGGGAAGGCTTTGGGCTCACACCGCTTGA
GGCAATGTCCTGCGGCGTGCCCGCAGTTGCCACCCGCGTCGGGGCTTTTGAAGAGTTGGTCATTCCGGGCGAGACCGGCA
CGCTCTGCGACATAGAGGATGTCGACAAGATCACGGCTGATGTCATTGCTCTGCTCTCGGATCGAGACCGGTTGAATGAG
ATGGCCACAGCGGCACGTGAGCATGTGGCCGGGACTTTCCGCCTCGAAGGCGAGGCAGCTGCCATCATCGCGATCTATCG
CAAGCTGCTCGGCCAAAACGGCGCGGGCGCCTAA

Upstream 100 bases:

>100_bases
GCGCGGGCACGCGATTTTCTGGCCCGCCAATCCGACCAGATGGATGACACTGTGACGGCGCTGCTCGACTTGCTGCCGTC
CCCCACATAAAGGGCGCCTG

Downstream 100 bases:

>100_bases
CCCCTGCGGTCGCTCCTGCGCAAGCGCAAACATTCACCATATTGAAATATGCAAATGCGTCCCACGCGCTCAACTATGTT
GATGGGATCCGCCCCCACAC

Product: glycosyl transferase, group 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSQIDLNQIDVIAPNFKKRYSGVTSTVIRLVPIQAREIAICAAAPDLPAEVPQVKPGALWTMARKGPSGARVWHARRNNE
MVAGLLLKYLLGKRLKLLFTSAAQRRHTGFTRWLIRRMDAVIATSSRSASYLERNATVIRHGIDCDLFQPVADRAALRRA
LDLPEDGLLVGCFGRIRPQKGNDLFVKAMIAACRANPEVRGLMMGRATADNAEFLQGLKDEVAAASLSDRILFRDEVAVE
DVPRHFQALDLYVAPQRWEGFGLTPLEAMSCGVPAVATRVGAFEELVIPGETGTLCDIEDVDKITADVIALLSDRDRLNE
MATAAREHVAGTFRLEGEAAAIIAIYRKLLGQNGAGA

Sequences:

>Translated_357_residues
MSQIDLNQIDVIAPNFKKRYSGVTSTVIRLVPIQAREIAICAAAPDLPAEVPQVKPGALWTMARKGPSGARVWHARRNNE
MVAGLLLKYLLGKRLKLLFTSAAQRRHTGFTRWLIRRMDAVIATSSRSASYLERNATVIRHGIDCDLFQPVADRAALRRA
LDLPEDGLLVGCFGRIRPQKGNDLFVKAMIAACRANPEVRGLMMGRATADNAEFLQGLKDEVAAASLSDRILFRDEVAVE
DVPRHFQALDLYVAPQRWEGFGLTPLEAMSCGVPAVATRVGAFEELVIPGETGTLCDIEDVDKITADVIALLSDRDRLNE
MATAAREHVAGTFRLEGEAAAIIAIYRKLLGQNGAGA
>Mature_356_residues
SQIDLNQIDVIAPNFKKRYSGVTSTVIRLVPIQAREIAICAAAPDLPAEVPQVKPGALWTMARKGPSGARVWHARRNNEM
VAGLLLKYLLGKRLKLLFTSAAQRRHTGFTRWLIRRMDAVIATSSRSASYLERNATVIRHGIDCDLFQPVADRAALRRAL
DLPEDGLLVGCFGRIRPQKGNDLFVKAMIAACRANPEVRGLMMGRATADNAEFLQGLKDEVAAASLSDRILFRDEVAVED
VPRHFQALDLYVAPQRWEGFGLTPLEAMSCGVPAVATRVGAFEELVIPGETGTLCDIEDVDKITADVIALLSDRDRLNEM
ATAAREHVAGTFRLEGEAAAIIAIYRKLLGQNGAGA

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 39010; Mature: 38878

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIDLNQIDVIAPNFKKRYSGVTSTVIRLVPIQAREIAICAAAPDLPAEVPQVKPGALW
CCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEE
TMARKGPSGARVWHARRNNEMVAGLLLKYLLGKRLKLLFTSAAQRRHTGFTRWLIRRMDA
EEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIATSSRSASYLERNATVIRHGIDCDLFQPVADRAALRRALDLPEDGLLVGCFGRIRPQK
HHHCCCCCHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
GNDLFVKAMIAACRANPEVRGLMMGRATADNAEFLQGLKDEVAAASLSDRILFRDEVAVE
CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHHH
DVPRHFQALDLYVAPQRWEGFGLTPLEAMSCGVPAVATRVGAFEELVIPGETGTLCDIED
HHHHHHHHEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHEEECCCCCCCCCHHH
VDKITADVIALLSDRDRLNEMATAAREHVAGTFRLEGEAAAIIAIYRKLLGQNGAGA
HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SQIDLNQIDVIAPNFKKRYSGVTSTVIRLVPIQAREIAICAAAPDLPAEVPQVKPGALW
CCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEE
TMARKGPSGARVWHARRNNEMVAGLLLKYLLGKRLKLLFTSAAQRRHTGFTRWLIRRMDA
EEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIATSSRSASYLERNATVIRHGIDCDLFQPVADRAALRRALDLPEDGLLVGCFGRIRPQK
HHHCCCCCHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
GNDLFVKAMIAACRANPEVRGLMMGRATADNAEFLQGLKDEVAAASLSDRILFRDEVAVE
CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHHH
DVPRHFQALDLYVAPQRWEGFGLTPLEAMSCGVPAVATRVGAFEELVIPGETGTLCDIED
HHHHHHHHEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHEEECCCCCCCCCHHH
VDKITADVIALLSDRDRLNEMATAAREHVAGTFRLEGEAAAIIAIYRKLLGQNGAGA
HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]