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The map label for this gene is yjbM [H]

Identifier: 94985528

GI number: 94985528

Start: 1516581

End: 1517669

Strand: Reverse

Name: yjbM [H]

Synonym: Dgeo_1428

Alternate gene names: 94985528

Gene position: 1517669-1516581 (Counterclockwise)

Preceding gene: 94985532

Following gene: 94985525

Centisome position: 61.51

GC content: 65.47

Gene sequence:

>1089_bases
ATGGACAACGAGGCGTTGGTGCAGACGTACCGAGAAGCGCTCCCAGAGTACGAGCGGTTACGCGACGCGGTGGTGGCGCA
TCTCACGCAGCGCTTAACCGCAGCAGGCCTCAAGATCCACCACGTGACGGGCCGAGTCAAGCGCCCCGCCAGTCTGGCCG
ACAAGCTGCGGCGTAAGCCGGGCCGCTACCACACCTTGGCGGACGTGACGGACCTCGTCGGCGTACGTGTGATCACCTAT
TTCGAACGGGACGTGAATGCGGTTGCCCGGCTGATCGAGGAACACTTCGTCGTGGACTGGGACAACAGCAGTGACAAGTC
CAAGATGCATGACCCCGACCGCTTTGGGTACCTCGGCGTGCATTACGTGGTGCGTGCCGAACCCGATCTTGTTCCCGCAC
TCGCAGGTACCCGTTATGAGGTGCAGATTCGCTCCATCCTCCAGCACGCCTGGGCCGAGATTGAACACGACCTGGGCTAC
AAGAACCGCGAGGCTGTCCCGCGCGAGGTCCGCCGCCGCTTCTACCGTCTGGCGGGCTTGCTGGAGATGGCCGACGAGGA
ATTTATGGCCCTGCACCGCATGGCCCGCGACTACGCCGCCACTCTGCCCGCGCGGATCGCAGAGGACCCCGAAAGCGTGT
TTATCGACGCCCAGAGCATGACCTACCTGCTGGATGTGCCGCCGATTCAGGCGCTTGATGCCCAGCTGGCCGCTGCCCTG
TATATTCCGCTGCTGTCCGACTGGCCCGATCCAGAACGCCCGCAGCGGCTCGCCAGTCTGCTGCACTACGTTGGTGTGCA
TTCCGTCGGCCTGCTCCAAAAGGAACTCGCCCGACACGGAGCAGAGGTGCAGCGTTTTGGGGTGGCCCTGCTGCCGCGGC
TCCGTGAACTGTGGCAGCCCTCCGGGGGCCTGCGCCGCGGCAGCAGCGTCGTGCAGTACGCTCTGTTGCGGGCCTGCGCA
AATCCCAGCCTAGACCCTGCCGAGGTGGTGCGGCGGCTGGACCTGAGCCGGGCAGGAACCTTGGAGGGGATGGTGCAGAC
GGTGCGGGAGGTGTACGCGGCGGAGAGAGGGGAGCACGCGGCGCGGTGA

Upstream 100 bases:

>100_bases
GGTTCATGGGGATAGCATGCACCCGCAGCGGTCAATCTGAAACCTTCCCTGAACATTTGCGGGCCTGTCTCGCCGCGGCG
GCACCTATGCTGCCTGCAGG

Downstream 100 bases:

>100_bases
GGCCGGAAGCAGCTGGTCCCCGCTCCCGCTTGCCTCACCGCCTCACACAAACGGCTGATCCTCGATGCGGCCGAGACGGG
TGTCTTCCCGCTCGCCCCCC

Product: RelA/SpoT

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MDNEALVQTYREALPEYERLRDAVVAHLTQRLTAAGLKIHHVTGRVKRPASLADKLRRKPGRYHTLADVTDLVGVRVITY
FERDVNAVARLIEEHFVVDWDNSSDKSKMHDPDRFGYLGVHYVVRAEPDLVPALAGTRYEVQIRSILQHAWAEIEHDLGY
KNREAVPREVRRRFYRLAGLLEMADEEFMALHRMARDYAATLPARIAEDPESVFIDAQSMTYLLDVPPIQALDAQLAAAL
YIPLLSDWPDPERPQRLASLLHYVGVHSVGLLQKELARHGAEVQRFGVALLPRLRELWQPSGGLRRGSSVVQYALLRACA
NPSLDPAEVVRRLDLSRAGTLEGMVQTVREVYAAERGEHAAR

Sequences:

>Translated_362_residues
MDNEALVQTYREALPEYERLRDAVVAHLTQRLTAAGLKIHHVTGRVKRPASLADKLRRKPGRYHTLADVTDLVGVRVITY
FERDVNAVARLIEEHFVVDWDNSSDKSKMHDPDRFGYLGVHYVVRAEPDLVPALAGTRYEVQIRSILQHAWAEIEHDLGY
KNREAVPREVRRRFYRLAGLLEMADEEFMALHRMARDYAATLPARIAEDPESVFIDAQSMTYLLDVPPIQALDAQLAAAL
YIPLLSDWPDPERPQRLASLLHYVGVHSVGLLQKELARHGAEVQRFGVALLPRLRELWQPSGGLRRGSSVVQYALLRACA
NPSLDPAEVVRRLDLSRAGTLEGMVQTVREVYAAERGEHAAR
>Mature_362_residues
MDNEALVQTYREALPEYERLRDAVVAHLTQRLTAAGLKIHHVTGRVKRPASLADKLRRKPGRYHTLADVTDLVGVRVITY
FERDVNAVARLIEEHFVVDWDNSSDKSKMHDPDRFGYLGVHYVVRAEPDLVPALAGTRYEVQIRSILQHAWAEIEHDLGY
KNREAVPREVRRRFYRLAGLLEMADEEFMALHRMARDYAATLPARIAEDPESVFIDAQSMTYLLDVPPIQALDAQLAAAL
YIPLLSDWPDPERPQRLASLLHYVGVHSVGLLQKELARHGAEVQRFGVALLPRLRELWQPSGGLRRGSSVVQYALLRACA
NPSLDPAEVVRRLDLSRAGTLEGMVQTVREVYAAERGEHAAR

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 40995; Mature: 40995

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNEALVQTYREALPEYERLRDAVVAHLTQRLTAAGLKIHHVTGRVKRPASLADKLRRKP
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCC
GRYHTLADVTDLVGVRVITYFERDVNAVARLIEEHFVVDWDNSSDKSKMHDPDRFGYLGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCHHCCCCCE
HYVVRAEPDLVPALAGTRYEVQIRSILQHAWAEIEHDLGYKNREAVPREVRRRFYRLAGL
EEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LEMADEEFMALHRMARDYAATLPARIAEDPESVFIDAQSMTYLLDVPPIQALDAQLAAAL
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHEEEECCCCEEEEECCCHHHHHHHHHHHH
YIPLLSDWPDPERPQRLASLLHYVGVHSVGLLQKELARHGAEVQRFGVALLPRLRELWQP
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
SGGLRRGSSVVQYALLRACANPSLDPAEVVRRLDLSRAGTLEGMVQTVREVYAAERGEHA
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
AR
CC
>Mature Secondary Structure
MDNEALVQTYREALPEYERLRDAVVAHLTQRLTAAGLKIHHVTGRVKRPASLADKLRRKP
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCC
GRYHTLADVTDLVGVRVITYFERDVNAVARLIEEHFVVDWDNSSDKSKMHDPDRFGYLGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCHHCCCCCE
HYVVRAEPDLVPALAGTRYEVQIRSILQHAWAEIEHDLGYKNREAVPREVRRRFYRLAGL
EEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LEMADEEFMALHRMARDYAATLPARIAEDPESVFIDAQSMTYLLDVPPIQALDAQLAAAL
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHEEEECCCCEEEEECCCHHHHHHHHHHHH
YIPLLSDWPDPERPQRLASLLHYVGVHSVGLLQKELARHGAEVQRFGVALLPRLRELWQP
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
SGGLRRGSSVVQYALLRACANPSLDPAEVVRRLDLSRAGTLEGMVQTVREVYAAERGEHA
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
AR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]