Definition Deinococcus geothermalis DSM 11300, complete genome.
Accession NC_008025
Length 2,467,205

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The map label for this gene is 94985525

Identifier: 94985525

GI number: 94985525

Start: 1512360

End: 1514891

Strand: Reverse

Name: 94985525

Synonym: Dgeo_1425

Alternate gene names: NA

Gene position: 1514891-1512360 (Counterclockwise)

Preceding gene: 94985528

Following gene: 94985524

Centisome position: 61.4

GC content: 64.81

Gene sequence:

>2532_bases
ATGCGACACCCTCATACGCTCGCCCTTACCCTCTTCCTCGCGGCGCCGGTCGCCCTTGCGCAACAGGCCGGAACCGTTCA
GGACGTGCTCGTCAACGGCACCAGTGATCTGCTCGCCAACTACGTCAAAGCCACCCTGAACGTCCAGCCCGGCGCGCTGC
TGTCCAGCGTGAACCTGCGCCAGGTCGAACAGGACGTGCTGGCAACCGGCTATTTCAAGACCGCCACCGCCGAACTGCGC
ACCATCGGCGGGCGGGACACACTGGTGATCACGGTCGCGCCAAACCCCACCATCAGTACGGTCGAGGCGACGGGCCTCAC
CTTCCTGCCCGCCGAGGGCTTCAAGAAGAGCATTGCCGAGCTGCTGAACATTGCGCCCGGCGCCACCCTGAATACCCAGC
GGCTCGACCAGGCCAAAGAGGCGCTCGCACAGAACTACCGCTCGGAGGGCTTTCCCTTCACGCCCAGCATCAGCGCGCAG
ACAAAGACCAACCCGGACGGCACGGTCACTGTCTCCTTTGTGGTGGACGAGAGCGCGCCGATTAACCGGGTGGAGGTTGA
GGGCGTGACGTTGCTCCCGGCCCAGACCGTCCGCGACATCTTCAAGCCGCTGTACGATGCCAAGCGGTTTAGTACCCAGA
CCTACTACAACGCGGTGCAGCAGCTCCAGCAGGCCTACGACGCGGCCGGGTACCTGCAGAGCGGCGTGAACGTGCAGGCC
AGCACCCTGGAAAATGGTGTGCTGAAGGTGCGGGTGGTGGAGAGCCGCGCGGCCAGCGTGAACCTCGACGGCATCGCGGC
GCCGGGCGTTTCCCTCCAGACCAAAGTCGGGCAGCCGCTTTCGCTGGAGCGCCTGCGTGCCGACGTGCGGACCCTCGCCA
ATGCGACGGGCAAGCCGGTGGGATTTGCGCTGCAACCCGACCCGCAGAACCCCGCCCAGATCGCGGTGTATTTCGGAGTG
GCGGACGTGGCGAGCGGACCGGTCAAGCAAATCGTCTTCAAGGGCAACACCCAGGTGCCGACCGCCACGCTGGCTGCGGC
GATCAAGACCAAGGTGGGGGACGTGTACTCGCCGCAGCTTGCTCAGGAAGACTTCCTGGCGCTGCGCGACGTCTACCGCA
AGGCGGGCTACGAACTCAGCACCCGCGACGCGGTGACCTTTCGTGACGGCACCCTCACCTTCAATGTTCGCGAGGTGAAG
CTGGCGGGGTACGAACTGCAGTGGCAGGGCAAGCACCGTACACAGGACCGGGTGATCCTGCGCGAGCTGCCCGCTCCTGG
CGGCCTCTACAACCTGAACGACCTGCGTGCCGGGCTGGCGAACGTGAGCCGCTTGGGCTTTGTGCAGATTGTGGGAGAAA
GCGTTCGCAGCGATCCGCAGAACCCCGAGAACGTGACCGAAGTGCTGACGCTGGCCGAAAGCAGCCAGGGCATTCCGGTC
AGCCTGGGTCTCCAGTACGACACCCTGACCGGCTTCGCTGGGGACGTGTCCTACAGCAATCCCAATGTCTTTGGCCTCGG
ACACAACCTGGGCGTTCAGGCCGGTGCCCAGCAGAACGATGCGGGGCAGAATCTCTTCGGGAGCGTGTCCTACACGATTC
CCTGGCTGGACCTCAATTTCCTCGATTTCCGCACCAATCGCACCAGCCTCAGCTCTTCGGTGTTTAGCACCGTGGCGGGA
AACCTGCCGCTGAACGACAAGAGCAGCGGCACCGCGGTGGATACTGGGCGCCAGTACACTGTGCGCAACACTGGCTTTAG
CGTGAGCGCCGGGCGCAACATCACCCGCAATCTGGCGGGTTCGGTGGGGGTCGGATACAGCTACCGCACCTATTTCCTCG
AACCGCTCAAGGGGGACGAGACGAGCACCTATACGGACGCTCAGGCGCAAGCGCTCCTCACGCCCACCACCCGCACCACC
AGCCTCAGCGCCACGCTGAACTACGACACCACCGATAATCCCGAGTTCCCGAGCCGAGGCGTGCGCGCGAATACCCAGCT
CTCCTACAACTTCGGCGCCTCAGGCAGCAGCCCGGTGAGCTGGACCGACGTGCAGGGGGGAGCCAGCACCTACTTGGGTC
TGGGCCGCACCCTCGACAAGGGCTTCGGTGTCCAGACTCGCCAGCAGGTGATTGCGGTGCGTGCCAACGTGGGGACCATC
AACGGTACCCCGCCCACCGGCACCGGCTACAACATCGGCGGCGGCAGCACGCCGGTCGCGGCCTACCAGCTGCGCGGCCT
GGACAACAACCAGCTGTTCGGCACCAACTACTTCACCGCCAGTGCCGAGTACCGCTACGACTTCAACCTCACCAACTCCT
TTACCCAGGGCCTCTACGGCGTGGCCTTTGTGGACGCGGGCGACGCTTGGAATGACGGCGAGCAAGTCAGCCTCAACTAC
GGCGTCGGCGCGGGCGTGCAGCTTAACCTGGGCTTCGGGGGCGCCCGCCTCCCCAGTCTGCGCTTCGACTACGGCTACAG
CCCCCAGAACGGCAGCGGCAAGTTCTACTTCCGCATCGGGAACTTCTTCTAA

Upstream 100 bases:

>100_bases
TCAGCGCGTCAGCAGGAAAGGTGAGACAAGGCACGTGCCAGGTGCTCCCGCCCAGCCGGACGCGGGGGAGTTTCCGCGCC
TGTGCAACACTAGGAGATGC

Downstream 100 bases:

>100_bases
AGAACGCAGCTTCTCAAGAAGAGGCGGGCTTCCGGCGAGGGGTCCGCCTCTTCGCTCTTGGGGTGGGGGCGCTTGACTCT
GCCCCAAGGGCAATGTCCAG

Product: surface antigen (D15)

Products: NA

Alternate protein names: Outer Membrane Protein; OmpIP Family Outer Membrane Porin; Outer Membrane Protein Assembly Complex Yaet Protein; Surface Antigen Outer Membrane Family

Number of amino acids: Translated: 843; Mature: 843

Protein sequence:

>843_residues
MRHPHTLALTLFLAAPVALAQQAGTVQDVLVNGTSDLLANYVKATLNVQPGALLSSVNLRQVEQDVLATGYFKTATAELR
TIGGRDTLVITVAPNPTISTVEATGLTFLPAEGFKKSIAELLNIAPGATLNTQRLDQAKEALAQNYRSEGFPFTPSISAQ
TKTNPDGTVTVSFVVDESAPINRVEVEGVTLLPAQTVRDIFKPLYDAKRFSTQTYYNAVQQLQQAYDAAGYLQSGVNVQA
STLENGVLKVRVVESRAASVNLDGIAAPGVSLQTKVGQPLSLERLRADVRTLANATGKPVGFALQPDPQNPAQIAVYFGV
ADVASGPVKQIVFKGNTQVPTATLAAAIKTKVGDVYSPQLAQEDFLALRDVYRKAGYELSTRDAVTFRDGTLTFNVREVK
LAGYELQWQGKHRTQDRVILRELPAPGGLYNLNDLRAGLANVSRLGFVQIVGESVRSDPQNPENVTEVLTLAESSQGIPV
SLGLQYDTLTGFAGDVSYSNPNVFGLGHNLGVQAGAQQNDAGQNLFGSVSYTIPWLDLNFLDFRTNRTSLSSSVFSTVAG
NLPLNDKSSGTAVDTGRQYTVRNTGFSVSAGRNITRNLAGSVGVGYSYRTYFLEPLKGDETSTYTDAQAQALLTPTTRTT
SLSATLNYDTTDNPEFPSRGVRANTQLSYNFGASGSSPVSWTDVQGGASTYLGLGRTLDKGFGVQTRQQVIAVRANVGTI
NGTPPTGTGYNIGGGSTPVAAYQLRGLDNNQLFGTNYFTASAEYRYDFNLTNSFTQGLYGVAFVDAGDAWNDGEQVSLNY
GVGAGVQLNLGFGGARLPSLRFDYGYSPQNGSGKFYFRIGNFF

Sequences:

>Translated_843_residues
MRHPHTLALTLFLAAPVALAQQAGTVQDVLVNGTSDLLANYVKATLNVQPGALLSSVNLRQVEQDVLATGYFKTATAELR
TIGGRDTLVITVAPNPTISTVEATGLTFLPAEGFKKSIAELLNIAPGATLNTQRLDQAKEALAQNYRSEGFPFTPSISAQ
TKTNPDGTVTVSFVVDESAPINRVEVEGVTLLPAQTVRDIFKPLYDAKRFSTQTYYNAVQQLQQAYDAAGYLQSGVNVQA
STLENGVLKVRVVESRAASVNLDGIAAPGVSLQTKVGQPLSLERLRADVRTLANATGKPVGFALQPDPQNPAQIAVYFGV
ADVASGPVKQIVFKGNTQVPTATLAAAIKTKVGDVYSPQLAQEDFLALRDVYRKAGYELSTRDAVTFRDGTLTFNVREVK
LAGYELQWQGKHRTQDRVILRELPAPGGLYNLNDLRAGLANVSRLGFVQIVGESVRSDPQNPENVTEVLTLAESSQGIPV
SLGLQYDTLTGFAGDVSYSNPNVFGLGHNLGVQAGAQQNDAGQNLFGSVSYTIPWLDLNFLDFRTNRTSLSSSVFSTVAG
NLPLNDKSSGTAVDTGRQYTVRNTGFSVSAGRNITRNLAGSVGVGYSYRTYFLEPLKGDETSTYTDAQAQALLTPTTRTT
SLSATLNYDTTDNPEFPSRGVRANTQLSYNFGASGSSPVSWTDVQGGASTYLGLGRTLDKGFGVQTRQQVIAVRANVGTI
NGTPPTGTGYNIGGGSTPVAAYQLRGLDNNQLFGTNYFTASAEYRYDFNLTNSFTQGLYGVAFVDAGDAWNDGEQVSLNY
GVGAGVQLNLGFGGARLPSLRFDYGYSPQNGSGKFYFRIGNFF
>Mature_843_residues
MRHPHTLALTLFLAAPVALAQQAGTVQDVLVNGTSDLLANYVKATLNVQPGALLSSVNLRQVEQDVLATGYFKTATAELR
TIGGRDTLVITVAPNPTISTVEATGLTFLPAEGFKKSIAELLNIAPGATLNTQRLDQAKEALAQNYRSEGFPFTPSISAQ
TKTNPDGTVTVSFVVDESAPINRVEVEGVTLLPAQTVRDIFKPLYDAKRFSTQTYYNAVQQLQQAYDAAGYLQSGVNVQA
STLENGVLKVRVVESRAASVNLDGIAAPGVSLQTKVGQPLSLERLRADVRTLANATGKPVGFALQPDPQNPAQIAVYFGV
ADVASGPVKQIVFKGNTQVPTATLAAAIKTKVGDVYSPQLAQEDFLALRDVYRKAGYELSTRDAVTFRDGTLTFNVREVK
LAGYELQWQGKHRTQDRVILRELPAPGGLYNLNDLRAGLANVSRLGFVQIVGESVRSDPQNPENVTEVLTLAESSQGIPV
SLGLQYDTLTGFAGDVSYSNPNVFGLGHNLGVQAGAQQNDAGQNLFGSVSYTIPWLDLNFLDFRTNRTSLSSSVFSTVAG
NLPLNDKSSGTAVDTGRQYTVRNTGFSVSAGRNITRNLAGSVGVGYSYRTYFLEPLKGDETSTYTDAQAQALLTPTTRTT
SLSATLNYDTTDNPEFPSRGVRANTQLSYNFGASGSSPVSWTDVQGGASTYLGLGRTLDKGFGVQTRQQVIAVRANVGTI
NGTPPTGTGYNIGGGSTPVAAYQLRGLDNNQLFGTNYFTASAEYRYDFNLTNSFTQGLYGVAFVDAGDAWNDGEQVSLNY
GVGAGVQLNLGFGGARLPSLRFDYGYSPQNGSGKFYFRIGNFF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 90097; Mature: 90097

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.1 %Met     (Translated Protein)
0.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.1 %Met     (Mature Protein)
0.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHPHTLALTLFLAAPVALAQQAGTVQDVLVNGTSDLLANYVKATLNVQPGALLSSVNLR
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHEECCHHHHHHHHHHHEECCCCCHHHHCCCHH
QVEQDVLATGYFKTATAELRTIGGRDTLVITVAPNPTISTVEATGLTFLPAEGFKKSIAE
HHHHHHHHCCCHHCCCHHHEECCCCCEEEEEECCCCCEEEEEECCEEEECCHHHHHHHHH
LLNIAPGATLNTQRLDQAKEALAQNYRSEGFPFTPSISAQTKTNPDGTVTVSFVVDESAP
HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
INRVEVEGVTLLPAQTVRDIFKPLYDAKRFSTQTYYNAVQQLQQAYDAAGYLQSGVNVQA
CCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
STLENGVLKVRVVESRAASVNLDGIAAPGVSLQTKVGQPLSLERLRADVRTLANATGKPV
EECCCCEEEEEEEECCCCEECCCCEECCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCE
GFALQPDPQNPAQIAVYFGVADVASGPVKQIVFKGNTQVPTATLAAAIKTKVGDVYSPQL
EEEECCCCCCCCEEEEEEEEHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCH
AQEDFLALRDVYRKAGYELSTRDAVTFRDGTLTFNVREVKLAGYELQWQGKHRTQDRVIL
HHHHHHHHHHHHHHCCCCEECCCEEEEECCEEEEEEEEEEEECEEEEECCCCCCCHHHHH
RELPAPGGLYNLNDLRAGLANVSRLGFVQIVGESVRSDPQNPENVTEVLTLAESSQGIPV
HHCCCCCCCCCHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCHHHHHHHHHHHCCCCCCEE
SLGLQYDTLTGFAGDVSYSNPNVFGLGHNLGVQAGAQQNDAGQNLFGSVSYTIPWLDLNF
EEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEE
LDFRTNRTSLSSSVFSTVAGNLPLNDKSSGTAVDTGRQYTVRNTGFSVSAGRNITRNLAG
EEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCEEEECCCCHHHHHCC
SVGVGYSYRTYFLEPLKGDETSTYTDAQAQALLTPTTRTTSLSATLNYDTTDNPEFPSRG
CCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
VRANTQLSYNFGASGSSPVSWTDVQGGASTYLGLGRTLDKGFGVQTRQQVIAVRANVGTI
CCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHCCCHHHCCCCCCCCEEEEEEEECCCEE
NGTPPTGTGYNIGGGSTPVAAYQLRGLDNNQLFGTNYFTASAEYRYDFNLTNSFTQGLYG
CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECEEEEECCEEEEEECCCHHHHCCCEE
VAFVDAGDAWNDGEQVSLNYGVGAGVQLNLGFGGARLPSLRFDYGYSPQNGSGKFYFRIG
EEEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEEEC
NFF
CCC
>Mature Secondary Structure
MRHPHTLALTLFLAAPVALAQQAGTVQDVLVNGTSDLLANYVKATLNVQPGALLSSVNLR
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHEECCHHHHHHHHHHHEECCCCCHHHHCCCHH
QVEQDVLATGYFKTATAELRTIGGRDTLVITVAPNPTISTVEATGLTFLPAEGFKKSIAE
HHHHHHHHCCCHHCCCHHHEECCCCCEEEEEECCCCCEEEEEECCEEEECCHHHHHHHHH
LLNIAPGATLNTQRLDQAKEALAQNYRSEGFPFTPSISAQTKTNPDGTVTVSFVVDESAP
HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
INRVEVEGVTLLPAQTVRDIFKPLYDAKRFSTQTYYNAVQQLQQAYDAAGYLQSGVNVQA
CCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
STLENGVLKVRVVESRAASVNLDGIAAPGVSLQTKVGQPLSLERLRADVRTLANATGKPV
EECCCCEEEEEEEECCCCEECCCCEECCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCE
GFALQPDPQNPAQIAVYFGVADVASGPVKQIVFKGNTQVPTATLAAAIKTKVGDVYSPQL
EEEECCCCCCCCEEEEEEEEHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCH
AQEDFLALRDVYRKAGYELSTRDAVTFRDGTLTFNVREVKLAGYELQWQGKHRTQDRVIL
HHHHHHHHHHHHHHCCCCEECCCEEEEECCEEEEEEEEEEEECEEEEECCCCCCCHHHHH
RELPAPGGLYNLNDLRAGLANVSRLGFVQIVGESVRSDPQNPENVTEVLTLAESSQGIPV
HHCCCCCCCCCHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCHHHHHHHHHHHCCCCCCEE
SLGLQYDTLTGFAGDVSYSNPNVFGLGHNLGVQAGAQQNDAGQNLFGSVSYTIPWLDLNF
EEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEE
LDFRTNRTSLSSSVFSTVAGNLPLNDKSSGTAVDTGRQYTVRNTGFSVSAGRNITRNLAG
EEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCEEEECCCCHHHHHCC
SVGVGYSYRTYFLEPLKGDETSTYTDAQAQALLTPTTRTTSLSATLNYDTTDNPEFPSRG
CCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
VRANTQLSYNFGASGSSPVSWTDVQGGASTYLGLGRTLDKGFGVQTRQQVIAVRANVGTI
CCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHCCCHHHCCCCCCCCEEEEEEEECCCEE
NGTPPTGTGYNIGGGSTPVAAYQLRGLDNNQLFGTNYFTASAEYRYDFNLTNSFTQGLYG
CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECEEEEECCEEEEEECCCHHHHCCCEE
VAFVDAGDAWNDGEQVSLNYGVGAGVQLNLGFGGARLPSLRFDYGYSPQNGSGKFYFRIG
EEEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEEEC
NFF
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA