Click here to switch to the map view.

The map label for this gene is pyrF [H]

Identifier: 94985504

GI number: 94985504

Start: 1489913

End: 1490734

Strand: Reverse

Name: pyrF [H]

Synonym: Dgeo_1404

Alternate gene names: 94985504

Gene position: 1490734-1489913 (Counterclockwise)

Preceding gene: 94985514

Following gene: 94985502

Centisome position: 60.42

GC content: 70.44

Gene sequence:

>822_bases
GTGTTAGCCTCCTCCGCGATGGTTCCCTTTGCCGCCGCTGTCACCGACCGCACCCGTCGCCTCCAGACCCGGCTGTGTGT
GGGCCTCGATCCGCGCGCGGGCGCCTACCGCGATCAGGCCCACCTGCGCGCGCACACCCTGGATGTGTTGGAGGCCACCG
CGCCCTATGCCGCCTGTGTCAAACCGCAGCTCGCCTTTTTCGAGGCCCTCGGTCTCCCCGGCTTCGCTCTACTGGAGGAA
GTCTGCGCCGCTGCGCGAACCCTCGGTCTGCCCGTCATTCTGGACGGCAAACGCGGCGATATCGGCTCTACGGCTGAGGC
CTACGCGCAGGGGTGGCTGACCGGCACGCACGCCGGGGACGCCCTGACGGTAAATCCCTTCCTGGGCTTTCAGACCCTCA
CGCCCTTCGTGGAGACAGCGCGCGCAAGCGGCGGGGGCATCTTTGTGCTGGTCAAGACCAGCAACCCCGATCAGGCCGAT
GTCCAAGGTCAGGGTGTCAGCGAGCGTGTGGCGGTGGAGGTGGCCCGGCTGGATGCTGAGGAGGACGGAGAATACGCGAG
CGTGGGCGCGGTGGTCGGCGCAACCCATCCGCAGGATCTCGCGCTCTTCCGCGCCCTGATGCCGCGGGCGCTGCTGCTGT
TGCCGGGCCTGGGGGCGCAGGGGGCCGCCGCCGCTGACCTCGCCCTGGCCTTTCACCCCGGTGGGACTGGGGCGCTGGCA
AGCGCGAGCCGAGCGGTGCAGTACGCGGACGGCCTGAGCGTGACCGCGAGCCGGGAGGCGGCCCGGCGCTTGCGCGACGA
GCTAAACGCCGCCCTCGGCTAG

Upstream 100 bases:

>100_bases
CCACCGCCAGAAATTTGCTCGCCACCGCCACGCCCAGGTCACCCGTGGCGGGGTCGCGGCCCACGATGGAAAAGGTCATG
GGCCGAGCGTAGCAGGTGGC

Downstream 100 bases:

>100_bases
CTGCCCCCTCCCCGAACCGAGATAAAGCTCAGCCGTCCCGAAAGACGGCTGCAACTGTGGATTACGGCGCGTTCGTGGCA
CAACCAGGCGTTTCAATCCT

Product: orotidine 5'-phosphate decarboxylase subfamily protein

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MLASSAMVPFAAAVTDRTRRLQTRLCVGLDPRAGAYRDQAHLRAHTLDVLEATAPYAACVKPQLAFFEALGLPGFALLEE
VCAAARTLGLPVILDGKRGDIGSTAEAYAQGWLTGTHAGDALTVNPFLGFQTLTPFVETARASGGGIFVLVKTSNPDQAD
VQGQGVSERVAVEVARLDAEEDGEYASVGAVVGATHPQDLALFRALMPRALLLLPGLGAQGAAAADLALAFHPGGTGALA
SASRAVQYADGLSVTASREAARRLRDELNAALG

Sequences:

>Translated_273_residues
MLASSAMVPFAAAVTDRTRRLQTRLCVGLDPRAGAYRDQAHLRAHTLDVLEATAPYAACVKPQLAFFEALGLPGFALLEE
VCAAARTLGLPVILDGKRGDIGSTAEAYAQGWLTGTHAGDALTVNPFLGFQTLTPFVETARASGGGIFVLVKTSNPDQAD
VQGQGVSERVAVEVARLDAEEDGEYASVGAVVGATHPQDLALFRALMPRALLLLPGLGAQGAAAADLALAFHPGGTGALA
SASRAVQYADGLSVTASREAARRLRDELNAALG
>Mature_273_residues
MLASSAMVPFAAAVTDRTRRLQTRLCVGLDPRAGAYRDQAHLRAHTLDVLEATAPYAACVKPQLAFFEALGLPGFALLEE
VCAAARTLGLPVILDGKRGDIGSTAEAYAQGWLTGTHAGDALTVNPFLGFQTLTPFVETARASGGGIFVLVKTSNPDQAD
VQGQGVSERVAVEVARLDAEEDGEYASVGAVVGATHPQDLALFRALMPRALLLLPGLGAQGAAAADLALAFHPGGTGALA
SASRAVQYADGLSVTASREAARRLRDELNAALG

Specific function: Unknown

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 2 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR018089
- InterPro:   IPR011995
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 28188; Mature: 28188

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS00156 OMPDECASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASSAMVPFAAAVTDRTRRLQTRLCVGLDPRAGAYRDQAHLRAHTLDVLEATAPYAACV
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
KPQLAFFEALGLPGFALLEEVCAAARTLGLPVILDGKRGDIGSTAEAYAQGWLTGTHAGD
CHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCEEECCCCC
ALTVNPFLGFQTLTPFVETARASGGGIFVLVKTSNPDQADVQGQGVSERVAVEVARLDAE
EEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCC
EDGEYASVGAVVGATHPQDLALFRALMPRALLLLPGLGAQGAAAADLALAFHPGGTGALA
CCCCEEEHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEECCCCCCHHH
SASRAVQYADGLSVTASREAARRLRDELNAALG
HHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLASSAMVPFAAAVTDRTRRLQTRLCVGLDPRAGAYRDQAHLRAHTLDVLEATAPYAACV
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
KPQLAFFEALGLPGFALLEEVCAAARTLGLPVILDGKRGDIGSTAEAYAQGWLTGTHAGD
CHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCEEECCCCC
ALTVNPFLGFQTLTPFVETARASGGGIFVLVKTSNPDQADVQGQGVSERVAVEVARLDAE
EEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCC
EDGEYASVGAVVGATHPQDLALFRALMPRALLLLPGLGAQGAAAADLALAFHPGGTGALA
CCCCEEEHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEECCCCCCHHH
SASRAVQYADGLSVTASREAARRLRDELNAALG
HHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]