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The map label for this gene is ycjP [C]

Identifier: 94972281

GI number: 94972281

Start: 210469

End: 211236

Strand: Direct

Name: ycjP [C]

Synonym: Dgeo_2818

Alternate gene names: 94972281

Gene position: 210469-211236 (Clockwise)

Preceding gene: 94972282

Following gene: 94972280

Centisome position: 36.66

GC content: 52.6

Gene sequence:

>768_bases
TTGGCGATCGTGATCATGCTGTTTCCCTTCGTGTGGATGCTGATGATGAGCCTCAAAACGCAGGTACAGAATACGGCGGC
GGTTCCGCTGTGGTTTTTCACTCCCACTTTAGAAAACTACCGCAACGTTATTGAGCGCAATAACTTTTTGCAATTCACCA
AAAATAGCATGATTGTTGCCGTTACGGCCACTGCTCTTGGTATGCTGCTCGGACTCCCCGCTGCCTATGCGATTGCCCGA
TTCAAACAACGCGGGCTAAGCCTGTGGATTCTCGTCAGTCGTATTATTCCGTATATTACATTTCTTCTGCCGCTGTTTTT
GGTGTTCACTCGGCTGAACCTGATTGGCAGCTACACGGCACTCATCATCAGTCATCTGATCATCACCCTGCCGCTCATTG
TGTGGATCACCATCGCATTCTTCGAGGATATCCCTACCGATCTGGAAGAAGCAGCGCTGGTGGACGGTTCGTCGCGGGTT
GGTGCGTTCGTACGAATCATCCTGCCCCTGGTTGCACCTGGCATCGTGACTGCCGGGATTCTGGCGATGATCTTTTCCTG
GAACCAGTTTCTGTTCAGTCTGATCCTGGGAGGCCCTAACACCAAGACGGTGCCGGTGGCGGTGTTCAACTTCTTGAGCT
ATGGCAGCCAGGATTACGGTGCGATCGCCGCCGCCGCCGTCCTGATTACGCTGCCGATTATCCTACTCTCCTTGACGGTA
CAAAAATACATCGTCAAGGGGCTGACTGCGGGTGGCGTAAAAGGATGA

Upstream 100 bases:

>100_bases
GGGTCTATCCGTTTGGGACGGTTTAGTGGATGTTTTTCGCGGTGTCCTACCCAAACTCGATTTCTCGTGCTGAGCAGTTA
CGCCCAATCTTCTGCTGGGC

Downstream 100 bases:

>100_bases
CTGGGCAGCATTTCACGCAGCCGATGCGCACACCTCCGCCCGTGATGCTGAGCCTTGATTTGGGAAGCAGCGGACTCAAA
GGATCGGCCTTTGACACCCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MAIVIMLFPFVWMLMMSLKTQVQNTAAVPLWFFTPTLENYRNVIERNNFLQFTKNSMIVAVTATALGMLLGLPAAYAIAR
FKQRGLSLWILVSRIIPYITFLLPLFLVFTRLNLIGSYTALIISHLIITLPLIVWITIAFFEDIPTDLEEAALVDGSSRV
GAFVRIILPLVAPGIVTAGILAMIFSWNQFLFSLILGGPNTKTVPVAVFNFLSYGSQDYGAIAAAAVLITLPIILLSLTV
QKYIVKGLTAGGVKG

Sequences:

>Translated_255_residues
MAIVIMLFPFVWMLMMSLKTQVQNTAAVPLWFFTPTLENYRNVIERNNFLQFTKNSMIVAVTATALGMLLGLPAAYAIAR
FKQRGLSLWILVSRIIPYITFLLPLFLVFTRLNLIGSYTALIISHLIITLPLIVWITIAFFEDIPTDLEEAALVDGSSRV
GAFVRIILPLVAPGIVTAGILAMIFSWNQFLFSLILGGPNTKTVPVAVFNFLSYGSQDYGAIAAAAVLITLPIILLSLTV
QKYIVKGLTAGGVKG
>Mature_254_residues
AIVIMLFPFVWMLMMSLKTQVQNTAAVPLWFFTPTLENYRNVIERNNFLQFTKNSMIVAVTATALGMLLGLPAAYAIARF
KQRGLSLWILVSRIIPYITFLLPLFLVFTRLNLIGSYTALIISHLIITLPLIVWITIAFFEDIPTDLEEAALVDGSSRVG
AFVRIILPLVAPGIVTAGILAMIFSWNQFLFSLILGGPNTKTVPVAVFNFLSYGSQDYGAIAAAAVLITLPIILLSLTVQ
KYIVKGLTAGGVKG

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=265, Percent_Identity=32.0754716981132, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790464, Length=212, Percent_Identity=35.377358490566, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789860, Length=266, Percent_Identity=27.0676691729323, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787368, Length=223, Percent_Identity=25.1121076233184, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787369, Length=225, Percent_Identity=28.4444444444444, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27986; Mature: 27855

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVIMLFPFVWMLMMSLKTQVQNTAAVPLWFFTPTLENYRNVIERNNFLQFTKNSMIVA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCCCHHEECCCCEEEE
VTATALGMLLGLPAAYAIARFKQRGLSLWILVSRIIPYITFLLPLFLVFTRLNLIGSYTA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIISHLIITLPLIVWITIAFFEDIPTDLEEAALVDGSSRVGAFVRIILPLVAPGIVTAGI
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAMIFSWNQFLFSLILGGPNTKTVPVAVFNFLSYGSQDYGAIAAAAVLITLPIILLSLTV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QKYIVKGLTAGGVKG
HHHHHHHCCCCCCCC
>Mature Secondary Structure 
AIVIMLFPFVWMLMMSLKTQVQNTAAVPLWFFTPTLENYRNVIERNNFLQFTKNSMIVA
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCCCHHEECCCCEEEE
VTATALGMLLGLPAAYAIARFKQRGLSLWILVSRIIPYITFLLPLFLVFTRLNLIGSYTA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIISHLIITLPLIVWITIAFFEDIPTDLEEAALVDGSSRVGAFVRIILPLVAPGIVTAGI
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAMIFSWNQFLFSLILGGPNTKTVPVAVFNFLSYGSQDYGAIAAAAVLITLPIILLSLTV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QKYIVKGLTAGGVKG
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]