Definition | Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence. |
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Accession | NC_008010 |
Length | 574,127 |
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The map label for this gene is 94972230
Identifier: 94972230
GI number: 94972230
Start: 260193
End: 261284
Strand: Direct
Name: 94972230
Synonym: Dgeo_2763
Alternate gene names: NA
Gene position: 260193-261284 (Clockwise)
Preceding gene: 94972231
Following gene: 94972229
Centisome position: 45.32
GC content: 63.83
Gene sequence:
>1092_bases GTGTATGACCTCAAGCTTCGCGGGGAGCGCGCGTCCATTCTGGCAGACGCGCTGCTCTCTGTTCCCACCAGTCCGTATCA ACAGCGCAGCCTGGAGGCTGCGCTGGGCCTCTTTCTCGACCTGAAGACGAAAAAAGCGTTGCACCGGGCACACACCGTCA GCGCCAGTGCCCTGAGTCGCCTGCTGAACGTGGATGAGTGGGATACGGCGGCCTGCTGGGCGACCCTGGTCCAGGCCCAA TGGGACGCCCTGCTCCTCGCGGCACGGCGCAACCATCATCCTCGTTTGCGTCTGTGCGTGGACCTGACCAGCATCCCGAA AACGGGACGCGAGCTGCCCTTCGTTCGCGTCTATCACGAGGTCTACGGGATTCATCTGGTGGTGCTGTACGCGGTGTACG GGGACCTGAAGTTTCCTGTGGGCTACCGAGTGTACCGGGGGAAGGGGACCCCTTCCCCCGTCCGGCTCGCCCTGGAACTG CTGGCCAGCGTGCCCGCCGAGGTGAGCCGCCGCTTCGACGTCTGGGTGTTGGCGGACAGCGGCTTCGAATCGTCAGCCTT CCTGCAAGGCGTGCGGGACCTGGGCTTCGAGTTCGTGGTCGGGGTCCGTTCAACTCGCCGCACTGACCATCCCGGTCACG TCACGGTGGAGGACTGCGAACACGGGAGCTGGGTGAATCTCGCCAACTGGCCCTGGGACACCCTGACGCTGGCCCGGATT CACCGAGGAGAGCGCACCTTTTTCTCGGTGGCATCACAACTGCTCCCGGGCGACCTCGTCGCCCGGGAGGGAGCACGGCG CTGGGCTATTGAGTCGTTTTTCAAGGAGGCCAAGCATGGCTTCGGGTTGAATCGGTTCGCGTTGCGAACCGCTCAAGGGC TGGACCGCTGGGTGCTGCTGGTCTTCGCTGCCTTTACCTTGTCCATGCTCTGCCGAACCGATGCCTTGTCCCTGGAACAG GCAGCGGAAGTTGCGGCTCGGGTGGCTCTGCCCCTGCTGGTCATTCAGCGACTCGCTGTGCAGGTCTGGCGAGAGGAAGA ATTCCTGCGCCAGCACGGCTATTCACTCACCCTATCCAGGTGCAAGACCTGA
Upstream 100 bases:
>100_bases GCCTCATCCTTGGGACTATCGGGCGTACTTGGTCGCAGTCACTCAGAACTTGCACCTGAAGAGGTAGCCAAAAAGCGCTC CCAGACGCGAGAAAGAGGGT
Downstream 100 bases:
>100_bases GATCTTGGCAGGCATGCCCGTCCCCCGTAAGTGGCAGCGGGGTTCTGGCAACTTAACGCAGGTAGGCTGGTGGGCTGTGA CTGACCGCAAGCCCTACCGC
Product: transposase, IS4
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSRLLNVDEWDTAACWATLVQAQ WDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHEVYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALEL LASVPAEVSRRFDVWVLADSGFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLLVFAAFTLSMLCRTDALSLEQ AAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSRCKT
Sequences:
>Translated_363_residues MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSRLLNVDEWDTAACWATLVQAQ WDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHEVYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALEL LASVPAEVSRRFDVWVLADSGFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLLVFAAFTLSMLCRTDALSLEQ AAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSRCKT >Mature_363_residues MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSRLLNVDEWDTAACWATLVQAQ WDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHEVYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALEL LASVPAEVSRRFDVWVLADSGFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLLVFAAFTLSMLCRTDALSLEQ AAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSRCKT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40930; Mature: 40930
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSR CCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLNVDEWDTAACWATLVQAQWDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHE HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHH VYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALELLASVPAEVSRRFDVWVLADS HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHCCCEEEEEECC GFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI CCCHHHHHHHHHHCCHHEEEECHHCCCCCCCCCEEEECCCCCCEECCCCCCCHHHHHHHH HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLL HCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VFAAFTLSMLCRTDALSLEQAAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHC CKT CCC >Mature Secondary Structure MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSR CCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLNVDEWDTAACWATLVQAQWDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHE HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHH VYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALELLASVPAEVSRRFDVWVLADS HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHCCCEEEEEECC GFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI CCCHHHHHHHHHHCCHHEEEECHHCCCCCCCCCEEEECCCCCCEECCCCCCCHHHHHHHH HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLL HCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VFAAFTLSMLCRTDALSLEQAAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHC CKT CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA