Definition Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence.
Accession NC_008010
Length 574,127

Click here to switch to the map view.

The map label for this gene is 94972230

Identifier: 94972230

GI number: 94972230

Start: 260193

End: 261284

Strand: Direct

Name: 94972230

Synonym: Dgeo_2763

Alternate gene names: NA

Gene position: 260193-261284 (Clockwise)

Preceding gene: 94972231

Following gene: 94972229

Centisome position: 45.32

GC content: 63.83

Gene sequence:

>1092_bases
GTGTATGACCTCAAGCTTCGCGGGGAGCGCGCGTCCATTCTGGCAGACGCGCTGCTCTCTGTTCCCACCAGTCCGTATCA
ACAGCGCAGCCTGGAGGCTGCGCTGGGCCTCTTTCTCGACCTGAAGACGAAAAAAGCGTTGCACCGGGCACACACCGTCA
GCGCCAGTGCCCTGAGTCGCCTGCTGAACGTGGATGAGTGGGATACGGCGGCCTGCTGGGCGACCCTGGTCCAGGCCCAA
TGGGACGCCCTGCTCCTCGCGGCACGGCGCAACCATCATCCTCGTTTGCGTCTGTGCGTGGACCTGACCAGCATCCCGAA
AACGGGACGCGAGCTGCCCTTCGTTCGCGTCTATCACGAGGTCTACGGGATTCATCTGGTGGTGCTGTACGCGGTGTACG
GGGACCTGAAGTTTCCTGTGGGCTACCGAGTGTACCGGGGGAAGGGGACCCCTTCCCCCGTCCGGCTCGCCCTGGAACTG
CTGGCCAGCGTGCCCGCCGAGGTGAGCCGCCGCTTCGACGTCTGGGTGTTGGCGGACAGCGGCTTCGAATCGTCAGCCTT
CCTGCAAGGCGTGCGGGACCTGGGCTTCGAGTTCGTGGTCGGGGTCCGTTCAACTCGCCGCACTGACCATCCCGGTCACG
TCACGGTGGAGGACTGCGAACACGGGAGCTGGGTGAATCTCGCCAACTGGCCCTGGGACACCCTGACGCTGGCCCGGATT
CACCGAGGAGAGCGCACCTTTTTCTCGGTGGCATCACAACTGCTCCCGGGCGACCTCGTCGCCCGGGAGGGAGCACGGCG
CTGGGCTATTGAGTCGTTTTTCAAGGAGGCCAAGCATGGCTTCGGGTTGAATCGGTTCGCGTTGCGAACCGCTCAAGGGC
TGGACCGCTGGGTGCTGCTGGTCTTCGCTGCCTTTACCTTGTCCATGCTCTGCCGAACCGATGCCTTGTCCCTGGAACAG
GCAGCGGAAGTTGCGGCTCGGGTGGCTCTGCCCCTGCTGGTCATTCAGCGACTCGCTGTGCAGGTCTGGCGAGAGGAAGA
ATTCCTGCGCCAGCACGGCTATTCACTCACCCTATCCAGGTGCAAGACCTGA

Upstream 100 bases:

>100_bases
GCCTCATCCTTGGGACTATCGGGCGTACTTGGTCGCAGTCACTCAGAACTTGCACCTGAAGAGGTAGCCAAAAAGCGCTC
CCAGACGCGAGAAAGAGGGT

Downstream 100 bases:

>100_bases
GATCTTGGCAGGCATGCCCGTCCCCCGTAAGTGGCAGCGGGGTTCTGGCAACTTAACGCAGGTAGGCTGGTGGGCTGTGA
CTGACCGCAAGCCCTACCGC

Product: transposase, IS4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSRLLNVDEWDTAACWATLVQAQ
WDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHEVYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALEL
LASVPAEVSRRFDVWVLADSGFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI
HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLLVFAAFTLSMLCRTDALSLEQ
AAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSRCKT

Sequences:

>Translated_363_residues
MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSRLLNVDEWDTAACWATLVQAQ
WDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHEVYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALEL
LASVPAEVSRRFDVWVLADSGFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI
HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLLVFAAFTLSMLCRTDALSLEQ
AAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSRCKT
>Mature_363_residues
MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSRLLNVDEWDTAACWATLVQAQ
WDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHEVYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALEL
LASVPAEVSRRFDVWVLADSGFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI
HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLLVFAAFTLSMLCRTDALSLEQ
AAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSRCKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40930; Mature: 40930

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSR
CCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNVDEWDTAACWATLVQAQWDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHE
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHH
VYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALELLASVPAEVSRRFDVWVLADS
HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHCCCEEEEEECC
GFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI
CCCHHHHHHHHHHCCHHEEEECHHCCCCCCCCCEEEECCCCCCEECCCCCCCHHHHHHHH
HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLL
HCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VFAAFTLSMLCRTDALSLEQAAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHC
CKT
CCC
>Mature Secondary Structure
MYDLKLRGERASILADALLSVPTSPYQQRSLEAALGLFLDLKTKKALHRAHTVSASALSR
CCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNVDEWDTAACWATLVQAQWDALLLAARRNHHPRLRLCVDLTSIPKTGRELPFVRVYHE
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHH
VYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALELLASVPAEVSRRFDVWVLADS
HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHCCCEEEEEECC
GFESSAFLQGVRDLGFEFVVGVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARI
CCCHHHHHHHHHHCCHHEEEECHHCCCCCCCCCEEEECCCCCCEECCCCCCCHHHHHHHH
HRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLL
HCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VFAAFTLSMLCRTDALSLEQAAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYSLTLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHC
CKT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA