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The map label for this gene is cbiD [H]

Identifier: 94971828

GI number: 94971828

Start: 130183

End: 131298

Strand: Direct

Name: cbiD [H]

Synonym: Dgeo_2359

Alternate gene names: 94971828

Gene position: 130183-131298 (Clockwise)

Preceding gene: 94971829

Following gene: 94971827

Centisome position: 22.67

GC content: 72.49

Gene sequence:

>1116_bases
ATGCCCACCCGATTGGACCTCAGCCTGCCCGCCGCCAATGGCCTGCGCCGGGGCTTCACAACGGGCAGCGCCGCCACTGC
CGCGCTGAAAGCGGCCCTGCTGCTGTTGGTGCGGGGCGAGTGCCCCACGGAGGTCGACATCACCCTCCCCGGAGGGGAGC
TGAGCCTGCGCCTGCCGGTGCAGAATGTCCGCCTGACCGACGCAGGGGCCTATGCCGAGGTTGTCAAGGACGGCGGCGAC
GACCCCGACGCCACCCACGGCGCGACCCTGTGGGTCACGGTCACGCCCCACGGCGGCGGGCCGATGACCTTCCACGCGGG
CGCGGGTGTGGGCACCGTCACCGCCCCCGGCATCCGTGTCCCGGTGGGCGAACCCGCCATCAATCCCGTCCCCCGCGCGA
TGCTGCGCCGGGCCGCCCATGAGGTGGCCGGGCACGAGGGGTTTGCCGTGACGGTGGGGTGTCTGGGCGGAGCCGAGATC
GCGCGCCGGACCTTCAATCCCCGGCTGGGTATTGTGGGCGGGATCTCCATCCTGGGGACAACGGGCCTGGTGGAACCCAT
GAGCCTGGAGGCCTACGCCGCCTCGGTCGAGGTGTACGTGCGGGTAGCCGTCCATGCTCGTCCAGACGCGGTGGTCTTCA
CACCTGGCAAGCTGGGCCGCGACTACGCCCGCGAGACGCTGAAGGTGCCCCCGCAGGCCATCGTCCAGATGAGCAACTTC
GTGGGGGCGGCGCTGGACGCGCTGCAAGCGGCGCTGGAGGAAACTGGGCACGCCCTCCCGCTGCTGCTGGTCGCCGGGCA
TCCCGGCAAGCTCGCCAAGGTCCTCAACGGCGACTGGAACACCCACAGCGGGCACAGCGGCATGGCGATGAACGCCCTGG
CCCGGGTGGCAGCGGGGTTGGCGGTGGACGGGGAAACGGTGCAGGCATTGGCCGGAGCGGGCACGGTGGACGCCTGCGTG
GCCCTCTTGGCCGCCCACCCGCGCGGACCGGATGTCTGGCGGGAGACGGCCCGGCAGGTGGCCAAAACCCTGCACGGGCG
CGCCCCCGCCGCAGGCCGTGTCCGGGTGGCCCTCTTCGCACTGGACGGGACCGGGCTGGCGGAGGCGGAGGCATGA

Upstream 100 bases:

>100_bases
GCCCCTGGGCCAGCAGCGTGGTGAATGCCCTGATGATCGAGGCGCAAAATCGCCTGGCTGCCGTCAGCGCCGCTGGGGCA
GGCGCGTGAGCCTCGCCGTG

Downstream 100 bases:

>100_bases
GCGGCACCTTCTACGGTCTGGGCGTTGGTCCCGGCCCCGGCGGCCTGCTGCCCGTCGCGGCGCTGGAGATCCTCCGAACT
GCCGACCTGATCTACACGCC

Product: cobalamin biosynthesis protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MPTRLDLSLPAANGLRRGFTTGSAATAALKAALLLLVRGECPTEVDITLPGGELSLRLPVQNVRLTDAGAYAEVVKDGGD
DPDATHGATLWVTVTPHGGGPMTFHAGAGVGTVTAPGIRVPVGEPAINPVPRAMLRRAAHEVAGHEGFAVTVGCLGGAEI
ARRTFNPRLGIVGGISILGTTGLVEPMSLEAYAASVEVYVRVAVHARPDAVVFTPGKLGRDYARETLKVPPQAIVQMSNF
VGAALDALQAALEETGHALPLLLVAGHPGKLAKVLNGDWNTHSGHSGMAMNALARVAAGLAVDGETVQALAGAGTVDACV
ALLAAHPRGPDVWRETARQVAKTLHGRAPAAGRVRVALFALDGTGLAEAEA

Sequences:

>Translated_371_residues
MPTRLDLSLPAANGLRRGFTTGSAATAALKAALLLLVRGECPTEVDITLPGGELSLRLPVQNVRLTDAGAYAEVVKDGGD
DPDATHGATLWVTVTPHGGGPMTFHAGAGVGTVTAPGIRVPVGEPAINPVPRAMLRRAAHEVAGHEGFAVTVGCLGGAEI
ARRTFNPRLGIVGGISILGTTGLVEPMSLEAYAASVEVYVRVAVHARPDAVVFTPGKLGRDYARETLKVPPQAIVQMSNF
VGAALDALQAALEETGHALPLLLVAGHPGKLAKVLNGDWNTHSGHSGMAMNALARVAAGLAVDGETVQALAGAGTVDACV
ALLAAHPRGPDVWRETARQVAKTLHGRAPAAGRVRVALFALDGTGLAEAEA
>Mature_370_residues
PTRLDLSLPAANGLRRGFTTGSAATAALKAALLLLVRGECPTEVDITLPGGELSLRLPVQNVRLTDAGAYAEVVKDGGDD
PDATHGATLWVTVTPHGGGPMTFHAGAGVGTVTAPGIRVPVGEPAINPVPRAMLRRAAHEVAGHEGFAVTVGCLGGAEIA
RRTFNPRLGIVGGISILGTTGLVEPMSLEAYAASVEVYVRVAVHARPDAVVFTPGKLGRDYARETLKVPPQAIVQMSNFV
GAALDALQAALEETGHALPLLLVAGHPGKLAKVLNGDWNTHSGHSGMAMNALARVAAGLAVDGETVQALAGAGTVDACVA
LLAAHPRGPDVWRETARQVAKTLHGRAPAAGRVRVALFALDGTGLAEAEA

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 37869; Mature: 37738

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTRLDLSLPAANGLRRGFTTGSAATAALKAALLLLVRGECPTEVDITLPGGELSLRLPV
CCCEEEEECCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECC
QNVRLTDAGAYAEVVKDGGDDPDATHGATLWVTVTPHGGGPMTFHAGAGVGTVTAPGIRV
CCEEEECCCHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCCCCEEC
PVGEPAINPVPRAMLRRAAHEVAGHEGFAVTVGCLGGAEIARRTFNPRLGIVGGISILGT
CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCEEECHHHHCC
TGLVEPMSLEAYAASVEVYVRVAVHARPDAVVFTPGKLGRDYARETLKVPPQAIVQMSNF
CCCCCCCCHHHHHHEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHH
VGAALDALQAALEETGHALPLLLVAGHPGKLAKVLNGDWNTHSGHSGMAMNALARVAAGL
HHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
AVDGETVQALAGAGTVDACVALLAAHPRGPDVWRETARQVAKTLHGRAPAAGRVRVALFA
EECCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
LDGTGLAEAEA
ECCCCCCCCCC
>Mature Secondary Structure 
PTRLDLSLPAANGLRRGFTTGSAATAALKAALLLLVRGECPTEVDITLPGGELSLRLPV
CCEEEEECCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECC
QNVRLTDAGAYAEVVKDGGDDPDATHGATLWVTVTPHGGGPMTFHAGAGVGTVTAPGIRV
CCEEEECCCHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCCCCEEC
PVGEPAINPVPRAMLRRAAHEVAGHEGFAVTVGCLGGAEIARRTFNPRLGIVGGISILGT
CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCEEECHHHHCC
TGLVEPMSLEAYAASVEVYVRVAVHARPDAVVFTPGKLGRDYARETLKVPPQAIVQMSNF
CCCCCCCCHHHHHHEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHH
VGAALDALQAALEETGHALPLLLVAGHPGKLAKVLNGDWNTHSGHSGMAMNALARVAAGL
HHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
AVDGETVQALAGAGTVDACVALLAAHPRGPDVWRETARQVAKTLHGRAPAAGRVRVALFA
EECCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
LDGTGLAEAEA
ECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]