Click here to switch to the map view.

The map label for this gene is yhjB [C]

Identifier: 94314780

GI number: 94314780

Start: 57827

End: 58756

Strand: Reverse

Name: yhjB [C]

Synonym: Rmet_5861

Alternate gene names: 94314780

Gene position: 58756-57827 (Counterclockwise)

Preceding gene: 291481471

Following gene: 94314779

Centisome position: 2.28

GC content: 65.27

Gene sequence:

>930_bases
ATGAACGCCTTGCTTATCGAGGAGCATCCATTGCTCCGGCTCGGGCTGCTGCAGATGCTCGAGACCATTCAGGAATTCGG
CCACGTACTTGCATTGTCGCCAGCTGACGTTGCCCGAACTGAAGTACCTCATCGGAATGCCGAACTGCTGGTCTTTGGCA
TGCCCGGCGACCAGGCCTATGGATGGGCGCAACTCGAACAGGCGCGCGAGCGTCTGGCGCCTCAACGCATCCTGGTGCTG
GCCGACGCCTTGCCGCTGCACGTGCCGAACGCGGAGGCCGCGCGCGGCATCTGCGGATGCCTGCCGAAGTCCACATCGCT
GCCCGTGATCGAGGCCGCCATCCGGCTGACCATCTCTAGCGTGCAGGGCCTGATGCTCGCAAGCGAGGTCTGCGCGACGC
CATCGGCATCGCGCTCGGCCATGCATGCCACGCAATCGCTGGCATCGGCTGCGCCATTGCCGTTGCCACCGGCCATGCAG
GAGCCGCTTTCGCCCGGCGCTTGCGCCAGCGTCCTGCGCACCACCGTTGCCGTGCGCGACCTCACGAGTCTGCGCCCGGG
CCAGCCGATCAGTTCGTCGGCTGCCCCGTTGTCGCCGATGGTCGAGGAGGAGCCTGGCTACGACGAAGCAGAGATGCTGC
AGATCACGCCGCGCCAGTACGAAGTGCTGGTGCTGCTGGCACGCGGGTATCCGATCAAAACCGTCAGCCGGATGCTCAAT
ATCTCGGTGGCCACCGTGAAGAGCCACGCCTGCACGCTTTATCAGCGCCTCAAGGTTCGTAACAAGGGAGAAGCCGTGTA
TGCGGCATTGCAGCGCGGCGCAACACTTGAGTGGGTCCATGGCGACGAACACTCGGCTCGCGACGGCGGTGTGCGGCGCG
TGATCGCCCGCGGCCCCGACGCACAGTACGACAGCAGCTTGCCTGCCTGA

Upstream 100 bases:

>100_bases
TCGCGGCACCGCCATTGGGGCGGCTGTCTGTCCTGACGCAGCAATGATTCCCGCAAGCAAAGCATCCCGCAGCTCACCCA
TGAACGGGGAGTGAAGAAGA

Downstream 100 bases:

>100_bases
CTCTCCGGATCTCCCGGACCCCTGCCATGCGGGCGCCTTCCTCGGAAGGCGCCCTTTTTCATTGGGCACGGCACATTGGG
CACGTCACGCCCGGGCGCTG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Two Component Transcriptional Regulator LuxR Family; Response Regulator; LuxR Family Regulatory Protein; Regulatory Protein LuxR; Transcriptional Regulator Luxr Family; Transcriptional Regulator LuxR Family; Transcription Regulator Protein; Negative Regulator Of Exopolysaccharide Production Protein; Transcription Regulator LuxR Family

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNALLIEEHPLLRLGLLQMLETIQEFGHVLALSPADVARTEVPHRNAELLVFGMPGDQAYGWAQLEQARERLAPQRILVL
ADALPLHVPNAEAARGICGCLPKSTSLPVIEAAIRLTISSVQGLMLASEVCATPSASRSAMHATQSLASAAPLPLPPAMQ
EPLSPGACASVLRTTVAVRDLTSLRPGQPISSSAAPLSPMVEEEPGYDEAEMLQITPRQYEVLVLLARGYPIKTVSRMLN
ISVATVKSHACTLYQRLKVRNKGEAVYAALQRGATLEWVHGDEHSARDGGVRRVIARGPDAQYDSSLPA

Sequences:

>Translated_309_residues
MNALLIEEHPLLRLGLLQMLETIQEFGHVLALSPADVARTEVPHRNAELLVFGMPGDQAYGWAQLEQARERLAPQRILVL
ADALPLHVPNAEAARGICGCLPKSTSLPVIEAAIRLTISSVQGLMLASEVCATPSASRSAMHATQSLASAAPLPLPPAMQ
EPLSPGACASVLRTTVAVRDLTSLRPGQPISSSAAPLSPMVEEEPGYDEAEMLQITPRQYEVLVLLARGYPIKTVSRMLN
ISVATVKSHACTLYQRLKVRNKGEAVYAALQRGATLEWVHGDEHSARDGGVRRVIARGPDAQYDSSLPA
>Mature_309_residues
MNALLIEEHPLLRLGLLQMLETIQEFGHVLALSPADVARTEVPHRNAELLVFGMPGDQAYGWAQLEQARERLAPQRILVL
ADALPLHVPNAEAARGICGCLPKSTSLPVIEAAIRLTISSVQGLMLASEVCATPSASRSAMHATQSLASAAPLPLPPAMQ
EPLSPGACASVLRTTVAVRDLTSLRPGQPISSSAAPLSPMVEEEPGYDEAEMLQITPRQYEVLVLLARGYPIKTVSRMLN
ISVATVKSHACTLYQRLKVRNKGEAVYAALQRGATLEWVHGDEHSARDGGVRRVIARGPDAQYDSSLPA

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33161; Mature: 33161

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALLIEEHPLLRLGLLQMLETIQEFGHVLALSPADVARTEVPHRNAELLVFGMPGDQAY
CCCEEECCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCEEEEECCCCCCC
GWAQLEQARERLAPQRILVLADALPLHVPNAEAARGICGCLPKSTSLPVIEAAIRLTISS
CHHHHHHHHHHHCCHHEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
VQGLMLASEVCATPSASRSAMHATQSLASAAPLPLPPAMQEPLSPGACASVLRTTVAVRD
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH
LTSLRPGQPISSSAAPLSPMVEEEPGYDEAEMLQITPRQYEVLVLLARGYPIKTVSRMLN
HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCCEEEEEEEECCCCHHHHHHHHH
ISVATVKSHACTLYQRLKVRNKGEAVYAALQRGATLEWVHGDEHSARDGGVRRVIARGPD
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCC
AQYDSSLPA
CCCCCCCCC
>Mature Secondary Structure
MNALLIEEHPLLRLGLLQMLETIQEFGHVLALSPADVARTEVPHRNAELLVFGMPGDQAY
CCCEEECCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCEEEEECCCCCCC
GWAQLEQARERLAPQRILVLADALPLHVPNAEAARGICGCLPKSTSLPVIEAAIRLTISS
CHHHHHHHHHHHCCHHEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
VQGLMLASEVCATPSASRSAMHATQSLASAAPLPLPPAMQEPLSPGACASVLRTTVAVRD
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH
LTSLRPGQPISSSAAPLSPMVEEEPGYDEAEMLQITPRQYEVLVLLARGYPIKTVSRMLN
HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCCEEEEEEEECCCCHHHHHHHHH
ISVATVKSHACTLYQRLKVRNKGEAVYAALQRGATLEWVHGDEHSARDGGVRRVIARGPD
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCC
AQYDSSLPA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA