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The map label for this gene is yvoA [H]

Identifier: 94312823

GI number: 94312823

Start: 439315

End: 440064

Strand: Direct

Name: yvoA [H]

Synonym: Rmet_3895

Alternate gene names: 94312823

Gene position: 439315-440064 (Clockwise)

Preceding gene: 94312822

Following gene: 94312824

Centisome position: 17.03

GC content: 65.73

Gene sequence:

>750_bases
ATGCCGGACGCCAACGATCTCCTCTCTCGCAGCCGCGAACCCGTCTATCTACAGCTGGCCACGATCTTTCGACGACAGAT
CGAAAGCGGCGCATGGCGGCCGGGTGAACAGATTCCTTCCCTCGAAGCGCTCTGCCGTCAGTACGGCGTGGCGCGCATGA
CCATGCACAACGCCCTTTCCCGTCTGGACGAGGAAGGGCTGGTCGAGCGCTCGCGCGGCCGGGGGACGTTCGTCAAGGCG
GGCGGCCGTGAATGCCGGCGAATGGCGTTGCCGATCAACTGGAACCAGGCCGTGGCCGTCGGCGACAAGCTGTCCACGGA
GGCCATCGTCGAATCCACCGCCGATGTGCCGCTGCCTGATGACCTGGGCATGCCCTGCGACGGCCGTCGCGCCGATGCCT
ACCATTTCCTGCACCGCGCTCATCGCACCGATGGAAGACCGTTTGCCGTGGGCGAGGTCTATATCGCAGCCGATGTCTTC
GCGCGCGACCCCGAGGCTTTCCGCCACGGCGCGTCGGTGCCGGTGCTCGACCGATTTCCCGGCCTCAAGGTCAATGCTGC
GCGGCAGCGGCTATCGATCGTTCCGGCCGGTGCCGAATCCGCCAGCGCGCTCGAACTGGCCGTGGGCGCCCCCGTGGCTG
AACTGCGGCGTTTTGCCTGCGTCGACGACGTGATCGTCTATTACGCACGGATCGAGTTCCCGACCGAGTATGTCTGCCTG
GATTTCGATCTGCTCGCCCCCCATTCCTGA

Upstream 100 bases:

>100_bases
AAAAGCGTGGTAGTGGTAAACCCTAGTAGTCTAGCTAGCTAGACTTTTAATAGAGTCCGATATCGACTTGGCGCGCCGGC
TGAATGCCGGCGCGTTTCGT

Downstream 100 bases:

>100_bases
CAACACCCACCAAATACGGAACCTGCAATGGAGACTCAAGACACGATGAACGGCGCGGAAAGCCTGGTGAAGACGCTGCT
GGCTTGCGGCGTCGATACCT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MPDANDLLSRSREPVYLQLATIFRRQIESGAWRPGEQIPSLEALCRQYGVARMTMHNALSRLDEEGLVERSRGRGTFVKA
GGRECRRMALPINWNQAVAVGDKLSTEAIVESTADVPLPDDLGMPCDGRRADAYHFLHRAHRTDGRPFAVGEVYIAADVF
ARDPEAFRHGASVPVLDRFPGLKVNAARQRLSIVPAGAESASALELAVGAPVAELRRFACVDDVIVYYARIEFPTEYVCL
DFDLLAPHS

Sequences:

>Translated_249_residues
MPDANDLLSRSREPVYLQLATIFRRQIESGAWRPGEQIPSLEALCRQYGVARMTMHNALSRLDEEGLVERSRGRGTFVKA
GGRECRRMALPINWNQAVAVGDKLSTEAIVESTADVPLPDDLGMPCDGRRADAYHFLHRAHRTDGRPFAVGEVYIAADVF
ARDPEAFRHGASVPVLDRFPGLKVNAARQRLSIVPAGAESASALELAVGAPVAELRRFACVDDVIVYYARIEFPTEYVCL
DFDLLAPHS
>Mature_248_residues
PDANDLLSRSREPVYLQLATIFRRQIESGAWRPGEQIPSLEALCRQYGVARMTMHNALSRLDEEGLVERSRGRGTFVKAG
GRECRRMALPINWNQAVAVGDKLSTEAIVESTADVPLPDDLGMPCDGRRADAYHFLHRAHRTDGRPFAVGEVYIAADVFA
RDPEAFRHGASVPVLDRFPGLKVNAARQRLSIVPAGAESASALELAVGAPVAELRRFACVDDVIVYYARIEFPTEYVCLD
FDLLAPHS

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=197, Percent_Identity=26.3959390862944, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=24.5689655172414, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27504; Mature: 27372

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDANDLLSRSREPVYLQLATIFRRQIESGAWRPGEQIPSLEALCRQYGVARMTMHNALS
CCCHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHH
RLDEEGLVERSRGRGTFVKAGGRECRRMALPINWNQAVAVGDKLSTEAIVESTADVPLPD
HHCHHHHHHHCCCCCEEEECCCHHHHEEECCCCCCCEEEECCCHHHHHHHHCCCCCCCCC
DLGMPCDGRRADAYHFLHRAHRTDGRPFAVGEVYIAADVFARDPEAFRHGASVPVLDRFP
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHCCHHHHHCCCCCCHHHCCC
GLKVNAARQRLSIVPAGAESASALELAVGAPVAELRRFACVDDVIVYYARIEFPTEYVCL
CCEEHHHHHHEEEEECCCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
DFDLLAPHS
EEHCCCCCC
>Mature Secondary Structure 
PDANDLLSRSREPVYLQLATIFRRQIESGAWRPGEQIPSLEALCRQYGVARMTMHNALS
CCHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHH
RLDEEGLVERSRGRGTFVKAGGRECRRMALPINWNQAVAVGDKLSTEAIVESTADVPLPD
HHCHHHHHHHCCCCCEEEECCCHHHHEEECCCCCCCEEEECCCHHHHHHHHCCCCCCCCC
DLGMPCDGRRADAYHFLHRAHRTDGRPFAVGEVYIAADVFARDPEAFRHGASVPVLDRFP
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHCCHHHHHCCCCCCHHHCCC
GLKVNAARQRLSIVPAGAESASALELAVGAPVAELRRFACVDDVIVYYARIEFPTEYVCL
CCEEHHHHHHEEEEECCCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
DFDLLAPHS
EEHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]