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The map label for this gene is ycaN [C]

Identifier: 94312803

GI number: 94312803

Start: 418322

End: 419245

Strand: Direct

Name: ycaN [C]

Synonym: Rmet_3875

Alternate gene names: 94312803

Gene position: 418322-419245 (Clockwise)

Preceding gene: 94312798

Following gene: 94312804

Centisome position: 16.21

GC content: 66.02

Gene sequence:

>924_bases
ATGGAAGCGCTGAACCTGCTCGAGTCATTTATCCAGAGTGCCGAAACCGGCAGCTTTTCGGCTGCCGCGCGTCGCCTCGG
GCTGACGCCGGCCGCAATCAGCAAGAACGTGGCGCGGCTGGAGAACCATCTCGGGCTTCGGCTGTTTCAGCGCAGCACGC
GCCGGCTGACGCTGACGATGGGCGGCGAGCAGTTCCTGCAGCAGGTATCCGATCCGTTCTCAACGCTGCGCGACGCGTTT
GCCAGCGCCGCGCAGGAGGACGGCAAGCCCGCCGGGGTGCTGCGCGTGAGCATGGGCGTGGCGTTCGGCCGCGAGTACCT
GGTGCCGTTGCTTGGCGAATTCCTGGCGCGTTATCCGGGCATCGTGCCGGACTGGCATTTCGAGAACCGCACCGTCGATC
TGATCGCCGGTGGTTTCGATGCGGCCATCGGCGGCGGTATCGAACTGACAGAAGGGGTGGTGGCGCGGGAACTGGCGCGG
ACCTACGTGGTGGTGGCAGCGTCGCCGGCGTATATGAAAGACCGGGCGATGCCCCGCCACCCGTCGGATCTGGCCGGCTT
CGACGGCATCGTGCGCCGGTCGGCTTCGACGGGACGTCTGCGGCATTGGAATCTGCGCAATCAGATAGGCGAGCAGGCGC
TGGCGGAGATGCGCACGCGCGTGATTCTCGACGACCCCGAGGCCATGGCCCATGCCGCCATGAGCGGCCTCGGCATTGCG
CTGCTGCCGATGCCACATGCCGCGCCCTGGCTCGAGAGCGGTGCGCTGGTGCGCCTCCTGCCAGGGTGGTATGCCGACAA
TGGGCCGATCGTGCTCTACTATCCGAACCGCAAGCTACTGCCGCCGAAAACGCGCGTATTCATCGACTTCATTGCGGAAT
CGTTCCAGAAGAATGCGCTCGCGCACCGATTCGACGGGCGCTGA

Upstream 100 bases:

>100_bases
GTGTGGTTGGGACGGTGAAAGCAGTATGGTTTTGGCGATCTGCAACCGGTAGTCATGATTCCGTATCAACTTTTTCAACC
GTTGATATAAGCTTCGACGC

Downstream 100 bases:

>100_bases
GCGAAACCACGTGTAGCACCTCACCCTCGGAGGGCTGTATGCCACCGGCAACACGAAGAGGTTTTCCGCTCCACGCTTAC
ATCTGGGCGCCGTTCGCCGT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEALNLLESFIQSAETGSFSAAARRLGLTPAAISKNVARLENHLGLRLFQRSTRRLTLTMGGEQFLQQVSDPFSTLRDAF
ASAAQEDGKPAGVLRVSMGVAFGREYLVPLLGEFLARYPGIVPDWHFENRTVDLIAGGFDAAIGGGIELTEGVVARELAR
TYVVVAASPAYMKDRAMPRHPSDLAGFDGIVRRSASTGRLRHWNLRNQIGEQALAEMRTRVILDDPEAMAHAAMSGLGIA
LLPMPHAAPWLESGALVRLLPGWYADNGPIVLYYPNRKLLPPKTRVFIDFIAESFQKNALAHRFDGR

Sequences:

>Translated_307_residues
MEALNLLESFIQSAETGSFSAAARRLGLTPAAISKNVARLENHLGLRLFQRSTRRLTLTMGGEQFLQQVSDPFSTLRDAF
ASAAQEDGKPAGVLRVSMGVAFGREYLVPLLGEFLARYPGIVPDWHFENRTVDLIAGGFDAAIGGGIELTEGVVARELAR
TYVVVAASPAYMKDRAMPRHPSDLAGFDGIVRRSASTGRLRHWNLRNQIGEQALAEMRTRVILDDPEAMAHAAMSGLGIA
LLPMPHAAPWLESGALVRLLPGWYADNGPIVLYYPNRKLLPPKTRVFIDFIAESFQKNALAHRFDGR
>Mature_307_residues
MEALNLLESFIQSAETGSFSAAARRLGLTPAAISKNVARLENHLGLRLFQRSTRRLTLTMGGEQFLQQVSDPFSTLRDAF
ASAAQEDGKPAGVLRVSMGVAFGREYLVPLLGEFLARYPGIVPDWHFENRTVDLIAGGFDAAIGGGIELTEGVVARELAR
TYVVVAASPAYMKDRAMPRHPSDLAGFDGIVRRSASTGRLRHWNLRNQIGEQALAEMRTRVILDDPEAMAHAAMSGLGIA
LLPMPHAAPWLESGALVRLLPGWYADNGPIVLYYPNRKLLPPKTRVFIDFIAESFQKNALAHRFDGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=29.3918918918919, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=31.0580204778157, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=30, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=27.6450511945392, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=27.8523489932886, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=27.681660899654, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=29.0102389078498, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786448, Length=118, Percent_Identity=40.6779661016949, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=31.3725490196078, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786713, Length=270, Percent_Identity=30.3703703703704, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=28.735632183908, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790208, Length=248, Percent_Identity=26.2096774193548, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=34.9593495934959, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787949, Length=312, Percent_Identity=25, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=118, Percent_Identity=30.5084745762712, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693105, Length=257, Percent_Identity=24.9027237354086, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI157672245, Length=113, Percent_Identity=34.5132743362832, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33650; Mature: 33650

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALNLLESFIQSAETGSFSAAARRLGLTPAAISKNVARLENHLGLRLFQRSTRRLTLTM
CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
GGEQFLQQVSDPFSTLRDAFASAAQEDGKPAGVLRVSMGVAFGREYLVPLLGEFLARYPG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCC
IVPDWHFENRTVDLIAGGFDAAIGGGIELTEGVVARELARTYVVVAASPAYMKDRAMPRH
CCCCCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHCCCCCC
PSDLAGFDGIVRRSASTGRLRHWNLRNQIGEQALAEMRTRVILDDPEAMAHAAMSGLGIA
CCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHCCCEE
LLPMPHAAPWLESGALVRLLPGWYADNGPIVLYYPNRKLLPPKTRVFIDFIAESFQKNAL
EEECCCCCCHHCCCCEEEECCCEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
AHRFDGR
HHHCCCC
>Mature Secondary Structure
MEALNLLESFIQSAETGSFSAAARRLGLTPAAISKNVARLENHLGLRLFQRSTRRLTLTM
CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
GGEQFLQQVSDPFSTLRDAFASAAQEDGKPAGVLRVSMGVAFGREYLVPLLGEFLARYPG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCC
IVPDWHFENRTVDLIAGGFDAAIGGGIELTEGVVARELARTYVVVAASPAYMKDRAMPRH
CCCCCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHCCCCCC
PSDLAGFDGIVRRSASTGRLRHWNLRNQIGEQALAEMRTRVILDDPEAMAHAAMSGLGIA
CCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHCCCEE
LLPMPHAAPWLESGALVRLLPGWYADNGPIVLYYPNRKLLPPKTRVFIDFIAESFQKNAL
EEECCCCCCHHCCCCEEEECCCEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
AHRFDGR
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]