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The map label for this gene is yfdE [H]

Identifier: 94312764

GI number: 94312764

Start: 375611

End: 376783

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_3834

Alternate gene names: 94312764

Gene position: 375611-376783 (Clockwise)

Preceding gene: 94312760

Following gene: 94312765

Centisome position: 14.56

GC content: 66.92

Gene sequence:

>1173_bases
ATGTCCCGACCCCTTGAAGGCATCACCGTCGTTTCGCTCGAGCAGGCCATCGCCGCGCCGTTCTGCACCCGTCAACTGGC
CGATCTCGGCGCGCGCGTCATCAAGATCGAGCGGCCTGGCCCGGGCGATTTCGCGCGTGCCTATGACGGCCGCGTGCGCG
GGCTGTCGTCCCACTTCGTCTGGACCAACCGTTCGAAGGAAAGCCTGACGCTCGACGTCAAGGCGCCTGCCGCGGCCCCG
GTGCTGGATTCCCTGCTGGCCAAGACCGATGTGTTGATCCAGAACCTGGCGCCGGGCGCGTCGACCCGCCTCGGGCTGGA
CTACGAGACGTTGTCGAAGCGCTTTCCGCGCCTGATCGTCTGCGATATCTCCGGCTACGGCGGCGATGGTCCCTATCGCG
ACAAGAAAGCCTATGACCTGCTGGTGCAGAGTGAATCGGGCTTCGTGTCGGTCACCGGCACGCCGGAAGAGGGCGTGAAG
GCCGGCGCCTCGGTGGCGGACATTGCCGCCGGCATGTACGCATACAGCAACGTGTTGGCCGCGCTGATCGAGCGGGGCCA
GACCGGCCGTGGCAAGCATATCGACGTGTCGATGCTCGAATCGATGGTCGAATGGATGAATTTCCCGATGTACTACGCGT
TCGATGGCGCCGAACCGCCGCCGCGCGCCGGGGCGTCGCATGCCACGATCTACCCGTACGGACCGTTCCCGACCGGCGAC
GGCAAGACCGTGATGCTTGGTTTGCAGAACGAACGCGAATGGGCGGCGTTCTGCAAGGTGGTGCTCCATGAGCCGGATCT
GGCCACTCACGCTGCGTTTGCCACCAACAGCCTGCGCAGCGCAAATCGCGCGCAACTGCGTGCCCGCATCGTTGAGGCGT
TCGGGCGGCTGACCGCCGCGCAGGTGGTGGAGCGGCTGGAGGAAGCAAAGATCGCCAACGCCAACGTCAACACGATGGCC
GACGTCTGGGCGCACCCGCAACTGGCGGCCCGCAAGCGCTGGCGCACCGTCGATACCCCGGCGGGGCAGATCCCGGCCCT
GCTGCCGCCCGGCATGACCGACGCGCGCATGGACCCGGTTCCGGCGGTGGGCGAGCACACGGACGCCATCCTTGCCGAGG
CCGGTTGCACTGCCGAACAGATCGCCCGGCTTCATGCCGACGGCGTGGTCTGA

Upstream 100 bases:

>100_bases
CTATTGATTCTACTTATGGAGCCTTCTGCAATCCCTATTTCACAGGTCGGAGGCGGGCGGGTAGATTGGCGGCATTGCGC
TACCTACCCAAGACACTGTC

Downstream 100 bases:

>100_bases
CGGAGGCGGGCGATGACAACCACCCGAGTGCCGCGCAGTTATCTGTTCGTTCCGGCATCGCGTCCGGAGCGTATTGGCAA
GGCGATCGCGGCTGGCGCCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSRPLEGITVVSLEQAIAAPFCTRQLADLGARVIKIERPGPGDFARAYDGRVRGLSSHFVWTNRSKESLTLDVKAPAAAP
VLDSLLAKTDVLIQNLAPGASTRLGLDYETLSKRFPRLIVCDISGYGGDGPYRDKKAYDLLVQSESGFVSVTGTPEEGVK
AGASVADIAAGMYAYSNVLAALIERGQTGRGKHIDVSMLESMVEWMNFPMYYAFDGAEPPPRAGASHATIYPYGPFPTGD
GKTVMLGLQNEREWAAFCKVVLHEPDLATHAAFATNSLRSANRAQLRARIVEAFGRLTAAQVVERLEEAKIANANVNTMA
DVWAHPQLAARKRWRTVDTPAGQIPALLPPGMTDARMDPVPAVGEHTDAILAEAGCTAEQIARLHADGVV

Sequences:

>Translated_390_residues
MSRPLEGITVVSLEQAIAAPFCTRQLADLGARVIKIERPGPGDFARAYDGRVRGLSSHFVWTNRSKESLTLDVKAPAAAP
VLDSLLAKTDVLIQNLAPGASTRLGLDYETLSKRFPRLIVCDISGYGGDGPYRDKKAYDLLVQSESGFVSVTGTPEEGVK
AGASVADIAAGMYAYSNVLAALIERGQTGRGKHIDVSMLESMVEWMNFPMYYAFDGAEPPPRAGASHATIYPYGPFPTGD
GKTVMLGLQNEREWAAFCKVVLHEPDLATHAAFATNSLRSANRAQLRARIVEAFGRLTAAQVVERLEEAKIANANVNTMA
DVWAHPQLAARKRWRTVDTPAGQIPALLPPGMTDARMDPVPAVGEHTDAILAEAGCTAEQIARLHADGVV
>Mature_389_residues
SRPLEGITVVSLEQAIAAPFCTRQLADLGARVIKIERPGPGDFARAYDGRVRGLSSHFVWTNRSKESLTLDVKAPAAAPV
LDSLLAKTDVLIQNLAPGASTRLGLDYETLSKRFPRLIVCDISGYGGDGPYRDKKAYDLLVQSESGFVSVTGTPEEGVKA
GASVADIAAGMYAYSNVLAALIERGQTGRGKHIDVSMLESMVEWMNFPMYYAFDGAEPPPRAGASHATIYPYGPFPTGDG
KTVMLGLQNEREWAAFCKVVLHEPDLATHAAFATNSLRSANRAQLRARIVEAFGRLTAAQVVERLEEAKIANANVNTMAD
VWAHPQLAARKRWRTVDTPAGQIPALLPPGMTDARMDPVPAVGEHTDAILAEAGCTAEQIARLHADGVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=381, Percent_Identity=34.1207349081365, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI300863124, Length=330, Percent_Identity=35.1515151515151, Blast_Score=219, Evalue=4e-57,
Organism=Homo sapiens, GI13376042, Length=330, Percent_Identity=31.5151515151515, Blast_Score=177, Evalue=2e-44,
Organism=Homo sapiens, GI300863126, Length=377, Percent_Identity=30.2387267904509, Blast_Score=172, Evalue=6e-43,
Organism=Homo sapiens, GI266456254, Length=393, Percent_Identity=28.2442748091603, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI42794625, Length=393, Percent_Identity=28.2442748091603, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI266458397, Length=206, Percent_Identity=34.9514563106796, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI266458393, Length=206, Percent_Identity=34.9514563106796, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI266458395, Length=162, Percent_Identity=35.8024691358025, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI42822893, Length=162, Percent_Identity=35.8024691358025, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87082093, Length=330, Percent_Identity=32.7272727272727, Blast_Score=197, Evalue=9e-52,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=27.2941176470588, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1786222, Length=409, Percent_Identity=27.8728606356968, Blast_Score=112, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI32564160, Length=304, Percent_Identity=27.9605263157895, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=257, Percent_Identity=28.4046692607004, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648431, Length=399, Percent_Identity=33.3333333333333, Blast_Score=204, Evalue=9e-53,
Organism=Drosophila melanogaster, GI24585488, Length=350, Percent_Identity=25.1428571428571, Blast_Score=92, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41894; Mature: 41763

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPLEGITVVSLEQAIAAPFCTRQLADLGARVIKIERPGPGDFARAYDGRVRGLSSHFV
CCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCHHCCCCCCEE
WTNRSKESLTLDVKAPAAAPVLDSLLAKTDVLIQNLAPGASTRLGLDYETLSKRFPRLIV
EECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEEE
CDISGYGGDGPYRDKKAYDLLVQSESGFVSVTGTPEEGVKAGASVADIAAGMYAYSNVLA
EEECCCCCCCCCCCCHHEEEEEECCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHH
ALIERGQTGRGKHIDVSMLESMVEWMNFPMYYAFDGAEPPPRAGASHATIYPYGPFPTGD
HHHHCCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCC
GKTVMLGLQNEREWAAFCKVVLHEPDLATHAAFATNSLRSANRAQLRARIVEAFGRLTAA
CCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVVERLEEAKIANANVNTMADVWAHPQLAARKRWRTVDTPAGQIPALLPPGMTDARMDPV
HHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAVGEHTDAILAEAGCTAEQIARLHADGVV
CCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SRPLEGITVVSLEQAIAAPFCTRQLADLGARVIKIERPGPGDFARAYDGRVRGLSSHFV
CCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCHHCCCCCCEE
WTNRSKESLTLDVKAPAAAPVLDSLLAKTDVLIQNLAPGASTRLGLDYETLSKRFPRLIV
EECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEEE
CDISGYGGDGPYRDKKAYDLLVQSESGFVSVTGTPEEGVKAGASVADIAAGMYAYSNVLA
EEECCCCCCCCCCCCHHEEEEEECCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHH
ALIERGQTGRGKHIDVSMLESMVEWMNFPMYYAFDGAEPPPRAGASHATIYPYGPFPTGD
HHHHCCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCC
GKTVMLGLQNEREWAAFCKVVLHEPDLATHAAFATNSLRSANRAQLRARIVEAFGRLTAA
CCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVVERLEEAKIANANVNTMADVWAHPQLAARKRWRTVDTPAGQIPALLPPGMTDARMDPV
HHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAVGEHTDAILAEAGCTAEQIARLHADGVV
CCCCCCHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]