Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
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Accession | NC_007973 |
Length | 3,928,089 |
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The map label for this gene is aidB [H]
Identifier: 94310790
GI number: 94310790
Start: 2005367
End: 2007226
Strand: Reverse
Name: aidB [H]
Synonym: Rmet_1852
Alternate gene names: 94310790
Gene position: 2007226-2005367 (Counterclockwise)
Preceding gene: 335055551
Following gene: 94310789
Centisome position: 51.1
GC content: 63.33
Gene sequence:
>1860_bases ATGTCGCTGATTCTTTCCCGTCGTGACCTCAACTTCGTTCTGTACGAATGGCTGAAGGCCGAGGAACTGACACAGATTCC CCGATTTTCCGATCACTCGCGCGAGACGTTCGACGCCGCGCTGGATACGTGCGAGAAAATCGCCACTGATCTGTTCGCCC CGCACAACAAGAAAAGCGATGCCCAGGAGCCGCATTTCGATGGCGAGACGGTCACGATCATCCCCGAAGTCAAGACCGCG CTGAAGGCCTTCTGCGATGCGGGCCTGATGGCCGCCGGCCAGGACTATGAGTACGGTGGCATGCAGTTGCCCGTCACGCT GGAGAAGGCCGCGTTCGCCTACTTCAAGGCCGCCAACGTTGGCACGAGTTCGTACCCGTTCCTGACGATCGGTAACTCGA ACCTGCTGCTCACGCACGGCACCCCGGCACAGATCGATACGTTCGTGCGTCCCGAACTGGAAGGTCGCTTCTTTGGCACG ATGTGCCTGTCGGAACCGCAGGCGGGTTCGTCGCTATCGGACATCACCACCCGCGCCGACTACGAAGGCGAGTCGCCGTT GGGCCAGCAGTATCGGCTGCGCGGCAACAAGATGTGGATCTCGGCGGGCGAGCACGAGCTCTCGGACAATATCGTCCACC TCGTGCTGGCCAAGATCCCGGGCCCGGATGGCAAGCTGATCCCGGGTGTGAAGGGTATCTCGCTGTTCATCGTGCCGAAG TACCTCGTCAACGAGGATGGCTCGCTGGGCGAGCATAACGACGTCGTGCTGGCGGGCCTGAACCACAAGATGGGCTATCG AGGCACCACCAACTGCCTGCTGAACTTCGGCGAAGGCATGAAGTACCGCCCGAATGGCAAGGCGGGTGCGATCGGTTATC TGGTCGGCGAGCCGCACAAGGGCTTGGCCTGCATGTTCCACATGATGAACGAGGCGCGCATTGGCGTTGGCCTCGGCGCC GTGGCACTTGGCTATACCGGTTACCTCCACGCGCTGGACTACGCGCGCAATCGTCCGCAGGGCCGCCCGGTGGGGCCGCA GGGCAAGGATCCGGCGAGCCCGCAGGTCAAGCTGGTCGAACATGCCGACGTCCGTCGGATGCTGCTGGCGCAAAAGAGCT ACGTCGAAGGCGGTCTGGCGTTGAACCTGTACTGCGCGCGGCTGGTCGACGACGAGCACGCGGCCAAGGCGGCCGGCGAG GCCGAGCGGCAATGCGAACTGTCGCTGCTGTTGGATATCCTCACGCCGATCGCCAAGAGCTGGCCGTCGCAGTGGTGCCT GGAAGCCAATAGCCTGGCCATCCAGGTGCATGGTGGCTACGGCTACACGCGCGAGTACAACGTCGAGCAGTTCTATCGCG ACAACCGCCTCAATCCGATCCACGAAGGCACGCACGGTATTCAGGGGCTGGACCTGCTGGGCCGCAAGGTGGTGATGCAG GACGGCGCCGCATTCCAGTTGCTCGGCAAGCGCGTGCAGGACACTTGCCAGCGGGCGCAGGCCACGGGTGACAAGACGCT GGGCGAGCAGGCCCGCGCGCTTGGCGCTGCGACCGCGCGCCTGGCCGAGGTCACGCGCACGCTGTGGGCGGCCGGAGATT CGAATGTCACGCTGGCCAACGCGTCGGTATATCTGGAGGCATTCGGCCATGTCGTCATGGCGTGGATCTGGCTTGAGCAG GTGCTGGTAGCGCAGGCCGCGCTGTCGAACGCCAAGGGCGAGGATGCCGATTTCTATCGCGGCAAGCTGGCTGCGGCGGC GTTCTTCTTCAACTTCGAGTTGCCGAAGGTGTACCCGCAACTCGAGCTGCTTGCATCGCTCGATCGTACGACGCTTGACA TGCAGGACGCCTGGTTCTGA
Upstream 100 bases:
>100_bases CCCCCAACCCCTCTGCCGCTTGGCGGGAGAGGGGCGCTTTTCCCCCACCGCATACTGAAGGCCAAGCCGCCTTTCGTTTC AGCCCGGAGCTTCCTATTCC
Downstream 100 bases:
>100_bases ACGCAAGCCGCCAAGAGGCAATTCTGGCGTCTAGCCAGAGCCGCTTCGCTTCATTTGTGTAGCGGCGAAGAAGGATAAAA CGGGAGACAACATGAGGACC
Product: acyl-CoA dehydrogenase
Products: 2-butenoyl-CoA; reduced acceptor
Alternate protein names: NA
Number of amino acids: Translated: 619; Mature: 618
Protein sequence:
>619_residues MSLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSDAQEPHFDGETVTIIPEVKTA LKAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANVGTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGT MCLSEPQAGSSLSDITTRADYEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPK YLVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHKGLACMFHMMNEARIGVGLGA VALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVEHADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGE AERQCELSLLLDILTPIAKSWPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQ DGAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLANASVYLEAFGHVVMAWIWLEQ VLVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQLELLASLDRTTLDMQDAWF
Sequences:
>Translated_619_residues MSLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSDAQEPHFDGETVTIIPEVKTA LKAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANVGTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGT MCLSEPQAGSSLSDITTRADYEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPK YLVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHKGLACMFHMMNEARIGVGLGA VALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVEHADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGE AERQCELSLLLDILTPIAKSWPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQ DGAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLANASVYLEAFGHVVMAWIWLEQ VLVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQLELLASLDRTTLDMQDAWF >Mature_618_residues SLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSDAQEPHFDGETVTIIPEVKTAL KAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANVGTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGTM CLSEPQAGSSLSDITTRADYEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPKY LVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHKGLACMFHMMNEARIGVGLGAV ALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVEHADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGEA ERQCELSLLLDILTPIAKSWPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQD GAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLANASVYLEAFGHVVMAWIWLEQV LVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQLELLASLDRTTLDMQDAWF
Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4501859, Length=394, Percent_Identity=28.1725888324873, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI4557235, Length=354, Percent_Identity=27.9661016949153, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI76496475, Length=354, Percent_Identity=27.4011299435028, Blast_Score=80, Evalue=6e-15, Organism=Homo sapiens, GI226958412, Length=347, Percent_Identity=25.9365994236311, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI226958414, Length=346, Percent_Identity=25.7225433526012, Blast_Score=74, Evalue=4e-13, Organism=Escherichia coli, GI87082384, Length=453, Percent_Identity=25.1655629139073, Blast_Score=89, Evalue=7e-19, Organism=Caenorhabditis elegans, GI86563383, Length=350, Percent_Identity=27.4285714285714, Blast_Score=83, Evalue=3e-16, Organism=Caenorhabditis elegans, GI86563381, Length=350, Percent_Identity=27.4285714285714, Blast_Score=83, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17569725, Length=444, Percent_Identity=24.3243243243243, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI24646207, Length=445, Percent_Identity=25.3932584269663, Blast_Score=86, Evalue=9e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006089 - InterPro: IPR006090 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR009100 [H]
Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]
EC number: 1.3.99.2
Molecular weight: Translated: 67824; Mature: 67693
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSD CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC AQEPHFDGETVTIIPEVKTALKAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANV CCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC GTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGTMCLSEPQAGSSLSDITTRAD CCCCCCEEEECCCCEEEECCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCC YEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPK CCCCCCCCCHHEECCCEEEEECCCHHHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEH YLVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHK HHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHEECCCCCEECCCCCCCEEEEEECCCCC GLACMFHMMNEARIGVGLGAVALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVE HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEH HADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGEAERQCELSLLLDILTPIAKS HHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHC WPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQ CCHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHC DGAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLAN CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE ASVYLEAFGHVVMAWIWLEQVLVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEEEECCCCHHHHH LELLASLDRTTLDMQDAWF HHHHHHCCCCEECCHHCCC >Mature Secondary Structure SLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSD CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC AQEPHFDGETVTIIPEVKTALKAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANV CCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC GTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGTMCLSEPQAGSSLSDITTRAD CCCCCCEEEECCCCEEEECCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCC YEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPK CCCCCCCCCHHEECCCEEEEECCCHHHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEH YLVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHK HHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHEECCCCCEECCCCCCCEEEEEECCCCC GLACMFHMMNEARIGVGLGAVALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVE HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEH HADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGEAERQCELSLLLDILTPIAKS HHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHC WPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQ CCHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHC DGAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLAN CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE ASVYLEAFGHVVMAWIWLEQVLVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEEEECCCCHHHHH LELLASLDRTTLDMQDAWF HHHHHHCCCCEECCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: butanoyl-CoA; acceptor
Specific reaction: butanoyl-CoA + acceptor = 2-butenoyl-CoA + reduced acceptor
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7961409; 7610040; 9278503 [H]