Definition Cupriavidus metallidurans CH34 chromosome, complete genome.
Accession NC_007973
Length 3,928,089

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The map label for this gene is aidB [H]

Identifier: 94310790

GI number: 94310790

Start: 2005367

End: 2007226

Strand: Reverse

Name: aidB [H]

Synonym: Rmet_1852

Alternate gene names: 94310790

Gene position: 2007226-2005367 (Counterclockwise)

Preceding gene: 335055551

Following gene: 94310789

Centisome position: 51.1

GC content: 63.33

Gene sequence:

>1860_bases
ATGTCGCTGATTCTTTCCCGTCGTGACCTCAACTTCGTTCTGTACGAATGGCTGAAGGCCGAGGAACTGACACAGATTCC
CCGATTTTCCGATCACTCGCGCGAGACGTTCGACGCCGCGCTGGATACGTGCGAGAAAATCGCCACTGATCTGTTCGCCC
CGCACAACAAGAAAAGCGATGCCCAGGAGCCGCATTTCGATGGCGAGACGGTCACGATCATCCCCGAAGTCAAGACCGCG
CTGAAGGCCTTCTGCGATGCGGGCCTGATGGCCGCCGGCCAGGACTATGAGTACGGTGGCATGCAGTTGCCCGTCACGCT
GGAGAAGGCCGCGTTCGCCTACTTCAAGGCCGCCAACGTTGGCACGAGTTCGTACCCGTTCCTGACGATCGGTAACTCGA
ACCTGCTGCTCACGCACGGCACCCCGGCACAGATCGATACGTTCGTGCGTCCCGAACTGGAAGGTCGCTTCTTTGGCACG
ATGTGCCTGTCGGAACCGCAGGCGGGTTCGTCGCTATCGGACATCACCACCCGCGCCGACTACGAAGGCGAGTCGCCGTT
GGGCCAGCAGTATCGGCTGCGCGGCAACAAGATGTGGATCTCGGCGGGCGAGCACGAGCTCTCGGACAATATCGTCCACC
TCGTGCTGGCCAAGATCCCGGGCCCGGATGGCAAGCTGATCCCGGGTGTGAAGGGTATCTCGCTGTTCATCGTGCCGAAG
TACCTCGTCAACGAGGATGGCTCGCTGGGCGAGCATAACGACGTCGTGCTGGCGGGCCTGAACCACAAGATGGGCTATCG
AGGCACCACCAACTGCCTGCTGAACTTCGGCGAAGGCATGAAGTACCGCCCGAATGGCAAGGCGGGTGCGATCGGTTATC
TGGTCGGCGAGCCGCACAAGGGCTTGGCCTGCATGTTCCACATGATGAACGAGGCGCGCATTGGCGTTGGCCTCGGCGCC
GTGGCACTTGGCTATACCGGTTACCTCCACGCGCTGGACTACGCGCGCAATCGTCCGCAGGGCCGCCCGGTGGGGCCGCA
GGGCAAGGATCCGGCGAGCCCGCAGGTCAAGCTGGTCGAACATGCCGACGTCCGTCGGATGCTGCTGGCGCAAAAGAGCT
ACGTCGAAGGCGGTCTGGCGTTGAACCTGTACTGCGCGCGGCTGGTCGACGACGAGCACGCGGCCAAGGCGGCCGGCGAG
GCCGAGCGGCAATGCGAACTGTCGCTGCTGTTGGATATCCTCACGCCGATCGCCAAGAGCTGGCCGTCGCAGTGGTGCCT
GGAAGCCAATAGCCTGGCCATCCAGGTGCATGGTGGCTACGGCTACACGCGCGAGTACAACGTCGAGCAGTTCTATCGCG
ACAACCGCCTCAATCCGATCCACGAAGGCACGCACGGTATTCAGGGGCTGGACCTGCTGGGCCGCAAGGTGGTGATGCAG
GACGGCGCCGCATTCCAGTTGCTCGGCAAGCGCGTGCAGGACACTTGCCAGCGGGCGCAGGCCACGGGTGACAAGACGCT
GGGCGAGCAGGCCCGCGCGCTTGGCGCTGCGACCGCGCGCCTGGCCGAGGTCACGCGCACGCTGTGGGCGGCCGGAGATT
CGAATGTCACGCTGGCCAACGCGTCGGTATATCTGGAGGCATTCGGCCATGTCGTCATGGCGTGGATCTGGCTTGAGCAG
GTGCTGGTAGCGCAGGCCGCGCTGTCGAACGCCAAGGGCGAGGATGCCGATTTCTATCGCGGCAAGCTGGCTGCGGCGGC
GTTCTTCTTCAACTTCGAGTTGCCGAAGGTGTACCCGCAACTCGAGCTGCTTGCATCGCTCGATCGTACGACGCTTGACA
TGCAGGACGCCTGGTTCTGA

Upstream 100 bases:

>100_bases
CCCCCAACCCCTCTGCCGCTTGGCGGGAGAGGGGCGCTTTTCCCCCACCGCATACTGAAGGCCAAGCCGCCTTTCGTTTC
AGCCCGGAGCTTCCTATTCC

Downstream 100 bases:

>100_bases
ACGCAAGCCGCCAAGAGGCAATTCTGGCGTCTAGCCAGAGCCGCTTCGCTTCATTTGTGTAGCGGCGAAGAAGGATAAAA
CGGGAGACAACATGAGGACC

Product: acyl-CoA dehydrogenase

Products: 2-butenoyl-CoA; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 619; Mature: 618

Protein sequence:

>619_residues
MSLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSDAQEPHFDGETVTIIPEVKTA
LKAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANVGTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGT
MCLSEPQAGSSLSDITTRADYEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPK
YLVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHKGLACMFHMMNEARIGVGLGA
VALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVEHADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGE
AERQCELSLLLDILTPIAKSWPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQ
DGAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLANASVYLEAFGHVVMAWIWLEQ
VLVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQLELLASLDRTTLDMQDAWF

Sequences:

>Translated_619_residues
MSLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSDAQEPHFDGETVTIIPEVKTA
LKAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANVGTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGT
MCLSEPQAGSSLSDITTRADYEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPK
YLVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHKGLACMFHMMNEARIGVGLGA
VALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVEHADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGE
AERQCELSLLLDILTPIAKSWPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQ
DGAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLANASVYLEAFGHVVMAWIWLEQ
VLVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQLELLASLDRTTLDMQDAWF
>Mature_618_residues
SLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSDAQEPHFDGETVTIIPEVKTAL
KAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANVGTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGTM
CLSEPQAGSSLSDITTRADYEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPKY
LVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHKGLACMFHMMNEARIGVGLGAV
ALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVEHADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGEA
ERQCELSLLLDILTPIAKSWPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQD
GAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLANASVYLEAFGHVVMAWIWLEQV
LVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQLELLASLDRTTLDMQDAWF

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=394, Percent_Identity=28.1725888324873, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI4557235, Length=354, Percent_Identity=27.9661016949153, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI76496475, Length=354, Percent_Identity=27.4011299435028, Blast_Score=80, Evalue=6e-15,
Organism=Homo sapiens, GI226958412, Length=347, Percent_Identity=25.9365994236311, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI226958414, Length=346, Percent_Identity=25.7225433526012, Blast_Score=74, Evalue=4e-13,
Organism=Escherichia coli, GI87082384, Length=453, Percent_Identity=25.1655629139073, Blast_Score=89, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI86563383, Length=350, Percent_Identity=27.4285714285714, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI86563381, Length=350, Percent_Identity=27.4285714285714, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17569725, Length=444, Percent_Identity=24.3243243243243, Blast_Score=79, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24646207, Length=445, Percent_Identity=25.3932584269663, Blast_Score=86, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: 1.3.99.2

Molecular weight: Translated: 67824; Mature: 67693

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSD
CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
AQEPHFDGETVTIIPEVKTALKAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANV
CCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC
GTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGTMCLSEPQAGSSLSDITTRAD
CCCCCCEEEECCCCEEEECCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCC
YEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPK
CCCCCCCCCHHEECCCEEEEECCCHHHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEH
YLVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHK
HHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHEECCCCCEECCCCCCCEEEEEECCCCC
GLACMFHMMNEARIGVGLGAVALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVE
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEH
HADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGEAERQCELSLLLDILTPIAKS
HHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
WPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQ
CCHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHC
DGAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLAN
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ASVYLEAFGHVVMAWIWLEQVLVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEEEECCCCHHHHH
LELLASLDRTTLDMQDAWF
HHHHHHCCCCEECCHHCCC
>Mature Secondary Structure 
SLILSRRDLNFVLYEWLKAEELTQIPRFSDHSRETFDAALDTCEKIATDLFAPHNKKSD
CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
AQEPHFDGETVTIIPEVKTALKAFCDAGLMAAGQDYEYGGMQLPVTLEKAAFAYFKAANV
CCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC
GTSSYPFLTIGNSNLLLTHGTPAQIDTFVRPELEGRFFGTMCLSEPQAGSSLSDITTRAD
CCCCCCEEEECCCCEEEECCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCC
YEGESPLGQQYRLRGNKMWISAGEHELSDNIVHLVLAKIPGPDGKLIPGVKGISLFIVPK
CCCCCCCCCHHEECCCEEEEECCCHHHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEH
YLVNEDGSLGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGMKYRPNGKAGAIGYLVGEPHK
HHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHEECCCCCEECCCCCCCEEEEEECCCCC
GLACMFHMMNEARIGVGLGAVALGYTGYLHALDYARNRPQGRPVGPQGKDPASPQVKLVE
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEH
HADVRRMLLAQKSYVEGGLALNLYCARLVDDEHAAKAAGEAERQCELSLLLDILTPIAKS
HHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
WPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKVVMQ
CCHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHC
DGAAFQLLGKRVQDTCQRAQATGDKTLGEQARALGAATARLAEVTRTLWAAGDSNVTLAN
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ASVYLEAFGHVVMAWIWLEQVLVAQAALSNAKGEDADFYRGKLAAAAFFFNFELPKVYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEEEECCCCHHHHH
LELLASLDRTTLDMQDAWF
HHHHHHCCCCEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: butanoyl-CoA; acceptor

Specific reaction: butanoyl-CoA + acceptor = 2-butenoyl-CoA + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]