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The map label for this gene is bbsG [H]

Identifier: 94310752

GI number: 94310752

Start: 1967696

End: 1968871

Strand: Reverse

Name: bbsG [H]

Synonym: Rmet_1814

Alternate gene names: 94310752

Gene position: 1968871-1967696 (Counterclockwise)

Preceding gene: 94310753

Following gene: 94310751

Centisome position: 50.12

GC content: 67.52

Gene sequence:

>1176_bases
ATGATGGCCATGGGAACCAATATTGCGGAGCTGCGCGGCAAGGTGCGGCAGTTCGTCGAACAGCACGCGATCCCGAGCGA
AGACCCTGTACTGGCGCATGACGTGCAGCGCCTTGACGTCGTGGTCCGGCGGCTGCAGGGTCTGGCCCGGGAGGCGGGCA
TCTACGCCCCCCATCTGCCGCCCGAGCACGGCGGGCTCGGGCTCGACTGGCAGGCGCGTGCCGAGATTCTGGAGGAAGCC
GGCCGCAGCTTCCTTGGCGCTCCGGCGCTGAATTGCGCGCCGCCCGACCAGCCGAACATGATCAACCTGATGCGCCACGG
CAACGCCGCGCAGCAGGCGCGCTACCTGCAGCCGCTGGTGCAGGGCCGGATCCGTTCGTGCTTCGCCATGACCGAACCGG
CGCCCGGCGCGGGCTCCGATCCGTCGATGCTGCGTACCACCGCCACGCGTCAGGACGGCAAATGGGTCATCAACGGCCAT
AAGTGGTTCATCAGCGGGGCCGTGGATGCGGCGTTCGCGATCGTGCTGGCGCGCACCGATGAGGCGGCCGGTACCGGCGC
CACGATGTTCATCGTCGATACCGACAACCCTGGCTACCGCCTCGTGCGGAACATCGCGGGGATGGACGGCTATCAGGTGG
GCGGCCACGGCGAGATCGTATTCGAGCAATGCGTGGTCGATGACGACGCGGTGCTTGGCCAGGTCGGGCAGGGCTTTGCC
TATGCCCAGGCGCGGCTGGAGCCCGCCCGGCTGTCGCACTGCATGCGTTTCATCGGCCGCGCGTCGCGTGCGATGGAGAT
CGCGCAGCAGTACGCCGCGCAGCGCGAGTCATTCGGGCAACGGCTGGCCGATCTGCAGCAGGTGCAGGCGATGGTGGCCG
ATTCGCATATCGACCTGCATGCCAGCCGGCTGATGGTGCGCGATTGCGCGCGCAAGATGGACGCCGGGGAATCGGTCAAG
CACGACTCCGCGATGACCAAGATCTTCGTGTCCGAAGCGGTCTGGCGCGTGGCTGACCGCGCGGTGCAGATCATGGGCGC
GCTCGGCATTTCCGATGACACCCCGGTCTCGATGATCCAGCGCGAACTACGCCCGTTCCGGATCTACGACGGTGCGTCCG
AACTGCATCGTGCCACGCTGGCACGTCGCATCTTCCAGCACGGGCTGCGCCCGTGA

Upstream 100 bases:

>100_bases
CGGAGCCGGTGGGCGATACGCCCGAGCAGTTCGGACAACAGATTCGTGCCGATGCGGCGTGGTGGGCCGCACTGGTCAAG
TCCACCGGCACCACGCTGGA

Downstream 100 bases:

>100_bases
ATCCGCAGTCAACCGCAAACAATCGCATGAATCCCGAAGCAGAACAACCCGGTGGCCCGCTGGCCGGGGTACGCATCCTC
GACATGGCCACCGTCATCGC

Product: acyl-CoA dehydrogenase, short-chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MMAMGTNIAELRGKVRQFVEQHAIPSEDPVLAHDVQRLDVVVRRLQGLAREAGIYAPHLPPEHGGLGLDWQARAEILEEA
GRSFLGAPALNCAPPDQPNMINLMRHGNAAQQARYLQPLVQGRIRSCFAMTEPAPGAGSDPSMLRTTATRQDGKWVINGH
KWFISGAVDAAFAIVLARTDEAAGTGATMFIVDTDNPGYRLVRNIAGMDGYQVGGHGEIVFEQCVVDDDAVLGQVGQGFA
YAQARLEPARLSHCMRFIGRASRAMEIAQQYAAQRESFGQRLADLQQVQAMVADSHIDLHASRLMVRDCARKMDAGESVK
HDSAMTKIFVSEAVWRVADRAVQIMGALGISDDTPVSMIQRELRPFRIYDGASELHRATLARRIFQHGLRP

Sequences:

>Translated_391_residues
MMAMGTNIAELRGKVRQFVEQHAIPSEDPVLAHDVQRLDVVVRRLQGLAREAGIYAPHLPPEHGGLGLDWQARAEILEEA
GRSFLGAPALNCAPPDQPNMINLMRHGNAAQQARYLQPLVQGRIRSCFAMTEPAPGAGSDPSMLRTTATRQDGKWVINGH
KWFISGAVDAAFAIVLARTDEAAGTGATMFIVDTDNPGYRLVRNIAGMDGYQVGGHGEIVFEQCVVDDDAVLGQVGQGFA
YAQARLEPARLSHCMRFIGRASRAMEIAQQYAAQRESFGQRLADLQQVQAMVADSHIDLHASRLMVRDCARKMDAGESVK
HDSAMTKIFVSEAVWRVADRAVQIMGALGISDDTPVSMIQRELRPFRIYDGASELHRATLARRIFQHGLRP
>Mature_391_residues
MMAMGTNIAELRGKVRQFVEQHAIPSEDPVLAHDVQRLDVVVRRLQGLAREAGIYAPHLPPEHGGLGLDWQARAEILEEA
GRSFLGAPALNCAPPDQPNMINLMRHGNAAQQARYLQPLVQGRIRSCFAMTEPAPGAGSDPSMLRTTATRQDGKWVINGH
KWFISGAVDAAFAIVLARTDEAAGTGATMFIVDTDNPGYRLVRNIAGMDGYQVGGHGEIVFEQCVVDDDAVLGQVGQGFA
YAQARLEPARLSHCMRFIGRASRAMEIAQQYAAQRESFGQRLADLQQVQAMVADSHIDLHASRLMVRDCARKMDAGESVK
HDSAMTKIFVSEAVWRVADRAVQIMGALGISDDTPVSMIQRELRPFRIYDGASELHRATLARRIFQHGLRP

Specific function: Catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA. [C]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI48976061, Length=402, Percent_Identity=34.0796019900498, Blast_Score=221, Evalue=8e-58,
Organism=Homo sapiens, GI211971008, Length=402, Percent_Identity=34.0796019900498, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI38505218, Length=390, Percent_Identity=34.6153846153846, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI4557233, Length=383, Percent_Identity=30.2872062663185, Blast_Score=167, Evalue=2e-41,
Organism=Homo sapiens, GI4501859, Length=377, Percent_Identity=29.4429708222812, Blast_Score=166, Evalue=2e-41,
Organism=Homo sapiens, GI226958412, Length=379, Percent_Identity=28.2321899736148, Blast_Score=152, Evalue=5e-37,
Organism=Homo sapiens, GI226958414, Length=380, Percent_Identity=28.6842105263158, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI4557231, Length=380, Percent_Identity=28.4210526315789, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI187960098, Length=380, Percent_Identity=28.4210526315789, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI21361497, Length=372, Percent_Identity=29.5698924731183, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI4501857, Length=377, Percent_Identity=27.3209549071618, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI76496475, Length=391, Percent_Identity=28.3887468030691, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI4557235, Length=391, Percent_Identity=28.3887468030691, Blast_Score=133, Evalue=4e-31,
Organism=Homo sapiens, GI7656849, Length=299, Percent_Identity=28.7625418060201, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI4503943, Length=284, Percent_Identity=26.056338028169, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI7669494, Length=256, Percent_Identity=26.171875, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1786223, Length=347, Percent_Identity=31.1239193083574, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI87081958, Length=338, Percent_Identity=31.9526627218935, Blast_Score=142, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI17562446, Length=354, Percent_Identity=31.9209039548023, Blast_Score=176, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17534899, Length=382, Percent_Identity=30.1047120418848, Blast_Score=162, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17570075, Length=394, Percent_Identity=29.4416243654822, Blast_Score=161, Evalue=6e-40,
Organism=Caenorhabditis elegans, GI17569725, Length=349, Percent_Identity=30.0859598853868, Blast_Score=157, Evalue=7e-39,
Organism=Caenorhabditis elegans, GI17538396, Length=388, Percent_Identity=28.8659793814433, Blast_Score=154, Evalue=8e-38,
Organism=Caenorhabditis elegans, GI17508101, Length=337, Percent_Identity=28.486646884273, Blast_Score=146, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17506239, Length=339, Percent_Identity=28.3185840707965, Blast_Score=138, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI17533517, Length=342, Percent_Identity=28.9473684210526, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI71985184, Length=351, Percent_Identity=28.4900284900285, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71990804, Length=284, Percent_Identity=29.9295774647887, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17551932, Length=329, Percent_Identity=27.6595744680851, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17505929, Length=346, Percent_Identity=25.7225433526012, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71982178, Length=285, Percent_Identity=25.9649122807018, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32563615, Length=232, Percent_Identity=28.8793103448276, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17531909, Length=248, Percent_Identity=25.8064516129032, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71985192, Length=292, Percent_Identity=27.0547945205479, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17534353, Length=292, Percent_Identity=23.972602739726, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21356377, Length=379, Percent_Identity=30.3430079155673, Blast_Score=167, Evalue=9e-42,
Organism=Drosophila melanogaster, GI24646207, Length=380, Percent_Identity=31.3157894736842, Blast_Score=158, Evalue=6e-39,
Organism=Drosophila melanogaster, GI24666513, Length=337, Percent_Identity=29.673590504451, Blast_Score=154, Evalue=8e-38,
Organism=Drosophila melanogaster, GI24660351, Length=343, Percent_Identity=31.7784256559767, Blast_Score=150, Evalue=2e-36,
Organism=Drosophila melanogaster, GI281363737, Length=352, Percent_Identity=29.2613636363636, Blast_Score=145, Evalue=6e-35,
Organism=Drosophila melanogaster, GI21355753, Length=392, Percent_Identity=27.8061224489796, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI19920834, Length=285, Percent_Identity=28.4210526315789, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24652780, Length=346, Percent_Identity=23.9884393063584, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.21 [H]

Molecular weight: Translated: 42897; Mature: 42897

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAMGTNIAELRGKVRQFVEQHAIPSEDPVLAHDVQRLDVVVRRLQGLAREAGIYAPHLP
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PEHGGLGLDWQARAEILEEAGRSFLGAPALNCAPPDQPNMINLMRHGNAAQQARYLQPLV
CCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHH
QGRIRSCFAMTEPAPGAGSDPSMLRTTATRQDGKWVINGHKWFISGAVDAAFAIVLARTD
HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCEEEEEHHHHHHHHHHHEECC
EAAGTGATMFIVDTDNPGYRLVRNIAGMDGYQVGGHGEIVFEQCVVDDDAVLGQVGQGFA
CCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCHHHHHHHCCCHH
YAQARLEPARLSHCMRFIGRASRAMEIAQQYAAQRESFGQRLADLQQVQAMVADSHIDLH
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ASRLMVRDCARKMDAGESVKHDSAMTKIFVSEAVWRVADRAVQIMGALGISDDTPVSMIQ
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
RELRPFRIYDGASELHRATLARRIFQHGLRP
HHCCCEEEECCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMAMGTNIAELRGKVRQFVEQHAIPSEDPVLAHDVQRLDVVVRRLQGLAREAGIYAPHLP
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PEHGGLGLDWQARAEILEEAGRSFLGAPALNCAPPDQPNMINLMRHGNAAQQARYLQPLV
CCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHH
QGRIRSCFAMTEPAPGAGSDPSMLRTTATRQDGKWVINGHKWFISGAVDAAFAIVLARTD
HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCEEEEEHHHHHHHHHHHEECC
EAAGTGATMFIVDTDNPGYRLVRNIAGMDGYQVGGHGEIVFEQCVVDDDAVLGQVGQGFA
CCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCHHHHHHHCCCHH
YAQARLEPARLSHCMRFIGRASRAMEIAQQYAAQRESFGQRLADLQQVQAMVADSHIDLH
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ASRLMVRDCARKMDAGESVKHDSAMTKIFVSEAVWRVADRAVQIMGALGISDDTPVSMIQ
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
RELRPFRIYDGASELHRATLARRIFQHGLRP
HHCCCEEEECCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10629170; 12420174 [H]