Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 94310751

GI number: 94310751

Start: 1966449

End: 1967669

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_1813

Alternate gene names: 94310751

Gene position: 1967669-1966449 (Counterclockwise)

Preceding gene: 94310752

Following gene: 94310750

Centisome position: 50.09

GC content: 68.06

Gene sequence:

>1221_bases
ATGAATCCCGAAGCAGAACAACCCGGTGGCCCGCTGGCCGGGGTACGCATCCTCGACATGGCCACCGTCATCGCCGCGCC
GTTTTCCAGCACGCTGTGCGCGGACATGGGCGCAGACGTCGTCAAACTCGAACTGCCCGATGGGAGCGACCCGCTGCGCG
GGCTGGCTCCGGTCAAGGGCGATCTGGCGCTGTACTGGAAGGTGACCAATCGCGGCAAGCGCGGTATCACGCTGGACGTG
CGCAAGCCGGCCGGGCGCGCATTGTTCCTGCGGATGCTGCCGGACTTCGACGTGCTCGTGGAGAACTTCCGGACCGGTAC
GCTTGATCGCTGGGGGCTCGATATCGACACGCTGCGGCGTGCCAATCCGCGTCTGGTCGTGCTGCGCCTGACCGGCTTCG
GGCAGACCGGCCCCTACGCACAGCGCGCCGGGTTTGCGCGGATCTTCGAGGCGATGAGCGGCTTCACGAACCTGACCGGC
GAGACGGGCGGGGCGCCGCTGCATATGAACTACCCGATGGGTGACATGGTGGCCGGCCTGTTCGGCGCGTTCGCGATTGC
CAGCGCCATCGCCGAACGTCGCCGGCCTGGCAACGAGACCATGCCGGGCCAGGAAATCGACCTGGCCGCCACCGAGGCGC
TGTTCCGGTTGCTGGAGCCGCTGGCGGTCGAGTACGAGCAGCTTGGCCAGGTCCGCCAGCGCGCGGGCAATCGCGCCACG
TATACCGCGCCGTCGAACATGTATGCCACGGCCGATGGCCAGTGGGTATCGCTGGTGGCATCGTCGGGCCCGATCTTCCG
GCGCCTGTGTCAGGCGATCGGGCAGCCGGGCGTGGCCGACGACCCGCGCTTCGCCACCAACCCGTCGCGGGTGCGCCATC
TGGACGCGCTCGATGAAGTCGTCGCCAGGTGGTTCGGCAGCCATGCCTATGCGGATGTGGCAAGCACCCTCGAGGCGCAC
GAGATTCCGTTCAGCAAGATTTTCTCGATCGCCGATATCGTCGACGATCCGCACTTTCAGGAACGGCAGGCGATCGTCAG
GCTGCCCGATCCGGACCTGGGCTCGATCCCGGCACCCTGCGTGGTGCCAAGGTTCGCCGGACACACCCCACCGCCAGCCA
GGAGCGGGCCGGGGGTCGGCGAGCACAATGCGGAAGTCTACGGCGCGTTGGGACTGACGGCCGCCGACCTGACCGGGCTG
CGCGAGGGCGGGGTGATCTAG

Upstream 100 bases:

>100_bases
TCTACGACGGTGCGTCCGAACTGCATCGTGCCACGCTGGCACGTCGCATCTTCCAGCACGGGCTGCGCCCGTGAATCCGC
AGTCAACCGCAAACAATCGC

Downstream 100 bases:

>100_bases
GCGGGCTGTGGTCAACGGCTTGCATCGACAACATACATACCCTCTGCGGCGTGGTTGTTGCGTTGCGGCACTTGGACGGC
CGGTCAGAGAAATGCCGACA

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MNPEAEQPGGPLAGVRILDMATVIAAPFSSTLCADMGADVVKLELPDGSDPLRGLAPVKGDLALYWKVTNRGKRGITLDV
RKPAGRALFLRMLPDFDVLVENFRTGTLDRWGLDIDTLRRANPRLVVLRLTGFGQTGPYAQRAGFARIFEAMSGFTNLTG
ETGGAPLHMNYPMGDMVAGLFGAFAIASAIAERRRPGNETMPGQEIDLAATEALFRLLEPLAVEYEQLGQVRQRAGNRAT
YTAPSNMYATADGQWVSLVASSGPIFRRLCQAIGQPGVADDPRFATNPSRVRHLDALDEVVARWFGSHAYADVASTLEAH
EIPFSKIFSIADIVDDPHFQERQAIVRLPDPDLGSIPAPCVVPRFAGHTPPPARSGPGVGEHNAEVYGALGLTAADLTGL
REGGVI

Sequences:

>Translated_406_residues
MNPEAEQPGGPLAGVRILDMATVIAAPFSSTLCADMGADVVKLELPDGSDPLRGLAPVKGDLALYWKVTNRGKRGITLDV
RKPAGRALFLRMLPDFDVLVENFRTGTLDRWGLDIDTLRRANPRLVVLRLTGFGQTGPYAQRAGFARIFEAMSGFTNLTG
ETGGAPLHMNYPMGDMVAGLFGAFAIASAIAERRRPGNETMPGQEIDLAATEALFRLLEPLAVEYEQLGQVRQRAGNRAT
YTAPSNMYATADGQWVSLVASSGPIFRRLCQAIGQPGVADDPRFATNPSRVRHLDALDEVVARWFGSHAYADVASTLEAH
EIPFSKIFSIADIVDDPHFQERQAIVRLPDPDLGSIPAPCVVPRFAGHTPPPARSGPGVGEHNAEVYGALGLTAADLTGL
REGGVI
>Mature_406_residues
MNPEAEQPGGPLAGVRILDMATVIAAPFSSTLCADMGADVVKLELPDGSDPLRGLAPVKGDLALYWKVTNRGKRGITLDV
RKPAGRALFLRMLPDFDVLVENFRTGTLDRWGLDIDTLRRANPRLVVLRLTGFGQTGPYAQRAGFARIFEAMSGFTNLTG
ETGGAPLHMNYPMGDMVAGLFGAFAIASAIAERRRPGNETMPGQEIDLAATEALFRLLEPLAVEYEQLGQVRQRAGNRAT
YTAPSNMYATADGQWVSLVASSGPIFRRLCQAIGQPGVADDPRFATNPSRVRHLDALDEVVARWFGSHAYADVASTLEAH
EIPFSKIFSIADIVDDPHFQERQAIVRLPDPDLGSIPAPCVVPRFAGHTPPPARSGPGVGEHNAEVYGALGLTAADLTGL
REGGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=377, Percent_Identity=26.790450928382, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI300863124, Length=403, Percent_Identity=25.5583126550869, Blast_Score=162, Evalue=8e-40,
Organism=Homo sapiens, GI13376042, Length=403, Percent_Identity=23.0769230769231, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI266456254, Length=399, Percent_Identity=25.8145363408521, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI42794625, Length=399, Percent_Identity=25.8145363408521, Blast_Score=126, Evalue=5e-29,
Organism=Homo sapiens, GI300863126, Length=175, Percent_Identity=34.8571428571429, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458393, Length=266, Percent_Identity=29.6992481203008, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=30.6772908366534, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=33.5616438356164, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=33.5616438356164, Blast_Score=86, Evalue=5e-17,
Organism=Escherichia coli, GI87082093, Length=338, Percent_Identity=30.7692307692308, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI1788717, Length=419, Percent_Identity=24.582338902148, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1786222, Length=404, Percent_Identity=23.7623762376238, Blast_Score=124, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI115535051, Length=342, Percent_Identity=25.7309941520468, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=319, Percent_Identity=25.3918495297806, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24648431, Length=405, Percent_Identity=30.8641975308642, Blast_Score=185, Evalue=6e-47,
Organism=Drosophila melanogaster, GI24585488, Length=271, Percent_Identity=30.9963099630996, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43562; Mature: 43562

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPEAEQPGGPLAGVRILDMATVIAAPFSSTLCADMGADVVKLELPDGSDPLRGLAPVKG
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
DLALYWKVTNRGKRGITLDVRKPAGRALFLRMLPDFDVLVENFRTGTLDRWGLDIDTLRR
CEEEEEEEECCCCCCEEEEECCCCCCEEEEHHCCCHHHHHHHHCCCCCHHCCCCHHHHHC
ANPRLVVLRLTGFGQTGPYAQRAGFARIFEAMSGFTNLTGETGGAPLHMNYPMGDMVAGL
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHH
FGAFAIASAIAERRRPGNETMPGQEIDLAATEALFRLLEPLAVEYEQLGQVRQRAGNRAT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
YTAPSNMYATADGQWVSLVASSGPIFRRLCQAIGQPGVADDPRFATNPSRVRHLDALDEV
EECCCCEEEECCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
VARWFGSHAYADVASTLEAHEIPFSKIFSIADIVDDPHFQERQAIVRLPDPDLGSIPAPC
HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCC
VVPRFAGHTPPPARSGPGVGEHNAEVYGALGLTAADLTGLREGGVI
CCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCC
>Mature Secondary Structure
MNPEAEQPGGPLAGVRILDMATVIAAPFSSTLCADMGADVVKLELPDGSDPLRGLAPVKG
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
DLALYWKVTNRGKRGITLDVRKPAGRALFLRMLPDFDVLVENFRTGTLDRWGLDIDTLRR
CEEEEEEEECCCCCCEEEEECCCCCCEEEEHHCCCHHHHHHHHCCCCCHHCCCCHHHHHC
ANPRLVVLRLTGFGQTGPYAQRAGFARIFEAMSGFTNLTGETGGAPLHMNYPMGDMVAGL
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHH
FGAFAIASAIAERRRPGNETMPGQEIDLAATEALFRLLEPLAVEYEQLGQVRQRAGNRAT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
YTAPSNMYATADGQWVSLVASSGPIFRRLCQAIGQPGVADDPRFATNPSRVRHLDALDEV
EECCCCEEEECCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
VARWFGSHAYADVASTLEAHEIPFSKIFSIADIVDDPHFQERQAIVRLPDPDLGSIPAPC
HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCC
VVPRFAGHTPPPARSGPGVGEHNAEVYGALGLTAADLTGLREGGVI
CCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]