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The map label for this gene is sodC1 [H]

Identifier: 93006724

GI number: 93006724

Start: 2347191

End: 2347748

Strand: Direct

Name: sodC1 [H]

Synonym: Pcryo_1900

Alternate gene names: 93006724

Gene position: 2347191-2347748 (Clockwise)

Preceding gene: 93006723

Following gene: 93006727

Centisome position: 76.71

GC content: 44.8

Gene sequence:

>558_bases
ATGAATAAGACAATGCTTGCAAGTGCACTATTATGTGGTTCTGCTTTAGCAATGACGGGTTGCCAAACGGTAGAAAGTCA
GATGCAAACAGGCAATCCTCTAAACCAACCTGTTTTAAAGTCGACCATTAATGCTGTTACTGGTGATAAAAATGAAGTCG
GGCAAATGTTTTTACGCCCCGTTGATGGCGGTGTACAAGTATATGGTAAGCTGATGAACTTGCAGCCGGGTCAGACCGTG
TCGCTACATATCCATGAAACAGGAAGCTGTGGCAATATGGGTAAAGCAGCAGGTGGGCATTTTAATCCAGATAATAAGCC
ACACTCTAACCCAGATGACATGAATGGCCATGCAGGCGACTTACCTAATCTAACGGCTAATGCGGATGGTGTCGCAACTA
TCAATTATGTGAATAAGAAAATTTCTGCCGCTGATGCTGGTAAATACAGCGTCAATCGCCTAGCCTTTATCGTGCATAGT
GGCGTTGATGATTACACCAGTCAGCCAGCTGGTAATGCCGGTGATCGCGTCGCTTGCGGTATCATCGAAAAAAGATAA

Upstream 100 bases:

>100_bases
TTGTTGCGCTTTTAGTGAATAACTCCTTCAAGCGCCTAGCTATACTGATACAGTAAATCATTGATGATATCAAAAACAAA
AATTTAAAACGGAGATAATA

Downstream 100 bases:

>100_bases
TTCATAGTCCATAATCACAGCTTCGATTTTAAATCATAAAAAAACCTCTTAGATTGTCTAAGAGGTTTTTTTATAGCCTA
AAACTACTGACAGCTTAAAG

Product: superoxide dismutase, copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNKTMLASALLCGSALAMTGCQTVESQMQTGNPLNQPVLKSTINAVTGDKNEVGQMFLRPVDGGVQVYGKLMNLQPGQTV
SLHIHETGSCGNMGKAAGGHFNPDNKPHSNPDDMNGHAGDLPNLTANADGVATINYVNKKISAADAGKYSVNRLAFIVHS
GVDDYTSQPAGNAGDRVACGIIEKR

Sequences:

>Translated_185_residues
MNKTMLASALLCGSALAMTGCQTVESQMQTGNPLNQPVLKSTINAVTGDKNEVGQMFLRPVDGGVQVYGKLMNLQPGQTV
SLHIHETGSCGNMGKAAGGHFNPDNKPHSNPDDMNGHAGDLPNLTANADGVATINYVNKKISAADAGKYSVNRLAFIVHS
GVDDYTSQPAGNAGDRVACGIIEKR
>Mature_185_residues
MNKTMLASALLCGSALAMTGCQTVESQMQTGNPLNQPVLKSTINAVTGDKNEVGQMFLRPVDGGVQVYGKLMNLQPGQTV
SLHIHETGSCGNMGKAAGGHFNPDNKPHSNPDDMNGHAGDLPNLTANADGVATINYVNKKISAADAGKYSVNRLAFIVHS
GVDDYTSQPAGNAGDRVACGIIEKR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=130, Percent_Identity=36.1538461538462, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI4826665, Length=134, Percent_Identity=34.3283582089552, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI1787934, Length=157, Percent_Identity=33.7579617834395, Blast_Score=74, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17554806, Length=124, Percent_Identity=37.0967741935484, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71981876, Length=125, Percent_Identity=36.8, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71981879, Length=125, Percent_Identity=36.8, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17537871, Length=121, Percent_Identity=37.1900826446281, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322564, Length=113, Percent_Identity=37.1681415929204, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007680, Length=177, Percent_Identity=33.8983050847458, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI85725006, Length=177, Percent_Identity=33.8983050847458, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI45551081, Length=177, Percent_Identity=33.8983050847458, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24652737, Length=177, Percent_Identity=33.8983050847458, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI17136496, Length=137, Percent_Identity=35.036496350365, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 19309; Mature: 19309

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTMLASALLCGSALAMTGCQTVESQMQTGNPLNQPVLKSTINAVTGDKNEVGQMFLRP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
VDGGVQVYGKLMNLQPGQTVSLHIHETGSCGNMGKAAGGHFNPDNKPHSNPDDMNGHAGD
CCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LPNLTANADGVATINYVNKKISAADAGKYSVNRLAFIVHSGVDDYTSQPAGNAGDRVACG
CCCCCCCCCCEEEEEHHHHHHCCCCCCCCCHHHEEEEEECCCCHHHCCCCCCCCCEEEEE
IIEKR
EECCC
>Mature Secondary Structure
MNKTMLASALLCGSALAMTGCQTVESQMQTGNPLNQPVLKSTINAVTGDKNEVGQMFLRP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
VDGGVQVYGKLMNLQPGQTVSLHIHETGSCGNMGKAAGGHFNPDNKPHSNPDDMNGHAGD
CCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LPNLTANADGVATINYVNKKISAADAGKYSVNRLAFIVHSGVDDYTSQPAGNAGDRVACG
CCCCCCCCCCEEEEEHHHHHHCCCCCCCCCHHHEEEEEECCCCHHHCCCCCCCCCEEEEE
IIEKR
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]