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The map label for this gene is glcF [H]

Identifier: 93006711

GI number: 93006711

Start: 2331109

End: 2332320

Strand: Direct

Name: glcF [H]

Synonym: Pcryo_1887

Alternate gene names: 93006711

Gene position: 2331109-2332320 (Clockwise)

Preceding gene: 93006710

Following gene: 93006712

Centisome position: 76.18

GC content: 49.5

Gene sequence:

>1212_bases
ATGCGAACTCAAATCAATATAAAATATCTGGATCACCCAGATATTCAAGAAGCCGACGATATTTTGCGCACTTGCGTTCA
CTGTGGATTTTGTAATGCCACGTGCCCCACGTATCAAGAGCTTGGCGATGAGCGTGACGGCCCTCGTGGTCGTATTTATT
TACTAAAACAAATGCTTGAAACTGGTGATGTTAGCGAAAAATCCCAACTTCATTTAGACCGTTGTTTAACTTGTCGTAGC
TGCGAAACCACTTGCCCCTCTGGGGTAAAATATGGCCGCTTGGCTGAAATCGGCCGCGATATTATGGAAGAACAGCTGTC
GCGACCTGCCGATCAAAGACTTAAACGCTGGCTTATCAGAAAGGTGTTGCCCTATCCGCACCGATTTGGGTTTATCTTAA
GACTCGGACAACTGTTTCGCTCCTTTTTGCCTCGCGACTTAAAAGCCCAAGTCCCTGTTAAGCAAATCACCCGCCCGCGA
CCCTCACAGCAACACTCGCGTCAAATGCTCGTGCTAGAGGGCTGCGCCCAACCTTCTGCCACTCCCAATACCAACAATGC
CGCCGCCCGAGTACTTGATAGGCTAGGCATTAGCTTGATTGCTGCACCAGATGCCGGATGTTGCGGCGCTGTGAGCTATC
ACATACCAGCCCATGAAGAAGGGCTTGCGTTTATGCGGCGCAATATCGATGCGTGGTGGCCATATATTGAGGCTGGGGCT
GAAGCCATTGTTATCAGCGCTTCAGGCTGCGGCTCGATGGTCAAGGAGTACGGCGAAAAACTCAAACATGACAACGCTTA
TGCAGCTAAAGCCAAGCGTATCAGTGCACTGACCCGAGACCTGAGTGAAATTTTGATCAAAGAGGACCTAGAGAAGTTGG
TAGTAAAACAGACGAATCGCAAGACCGCTGTCCACTGCCCATGCTCGCTACAGCACGCTCAGCAGTTAGGCGGTCATGTT
GAGCAGATATTGCAACGCGCTGGGATTGAGCTCTCTAAAACCCAAAACGGACATTTATGCTGCGGCTCTGCTGGTACTTA
CTCGCTCCTTCAGCCTACGCTTAGCCAGCAACTACTCACCAATAAAATCAACGATCTTACCATCGATAACCCAGATCAGA
TTGTGACAGCCAATATCGGATGCCAATTGCATTTAGGCAGCCATGCGTCCGTCCCAGTCAAGCATTGGATCGAATTGTTA
GACCCACAATAA

Upstream 100 bases:

>100_bases
TCCACCAACGCCTCAAACACGCCTTTGATCCGAATGGTGTTTTCAATCCCAATCGTTTATACAGCTGGATGTAAATTAGC
TCGATGACAAGGAAGTCGTA

Downstream 100 bases:

>100_bases
AACCAACTATAATGAGTTAAGCGGATTGTAAAGGACAATCATAATCAGCTCTTAACTACTTTAACAAAGAATACAAGGTC
TCAGCTAATTTTTGAAATAA

Product: glycolate oxidase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MRTQINIKYLDHPDIQEADDILRTCVHCGFCNATCPTYQELGDERDGPRGRIYLLKQMLETGDVSEKSQLHLDRCLTCRS
CETTCPSGVKYGRLAEIGRDIMEEQLSRPADQRLKRWLIRKVLPYPHRFGFILRLGQLFRSFLPRDLKAQVPVKQITRPR
PSQQHSRQMLVLEGCAQPSATPNTNNAAARVLDRLGISLIAAPDAGCCGAVSYHIPAHEEGLAFMRRNIDAWWPYIEAGA
EAIVISASGCGSMVKEYGEKLKHDNAYAAKAKRISALTRDLSEILIKEDLEKLVVKQTNRKTAVHCPCSLQHAQQLGGHV
EQILQRAGIELSKTQNGHLCCGSAGTYSLLQPTLSQQLLTNKINDLTIDNPDQIVTANIGCQLHLGSHASVPVKHWIELL
DPQ

Sequences:

>Translated_403_residues
MRTQINIKYLDHPDIQEADDILRTCVHCGFCNATCPTYQELGDERDGPRGRIYLLKQMLETGDVSEKSQLHLDRCLTCRS
CETTCPSGVKYGRLAEIGRDIMEEQLSRPADQRLKRWLIRKVLPYPHRFGFILRLGQLFRSFLPRDLKAQVPVKQITRPR
PSQQHSRQMLVLEGCAQPSATPNTNNAAARVLDRLGISLIAAPDAGCCGAVSYHIPAHEEGLAFMRRNIDAWWPYIEAGA
EAIVISASGCGSMVKEYGEKLKHDNAYAAKAKRISALTRDLSEILIKEDLEKLVVKQTNRKTAVHCPCSLQHAQQLGGHV
EQILQRAGIELSKTQNGHLCCGSAGTYSLLQPTLSQQLLTNKINDLTIDNPDQIVTANIGCQLHLGSHASVPVKHWIELL
DPQ
>Mature_403_residues
MRTQINIKYLDHPDIQEADDILRTCVHCGFCNATCPTYQELGDERDGPRGRIYLLKQMLETGDVSEKSQLHLDRCLTCRS
CETTCPSGVKYGRLAEIGRDIMEEQLSRPADQRLKRWLIRKVLPYPHRFGFILRLGQLFRSFLPRDLKAQVPVKQITRPR
PSQQHSRQMLVLEGCAQPSATPNTNNAAARVLDRLGISLIAAPDAGCCGAVSYHIPAHEEGLAFMRRNIDAWWPYIEAGA
EAIVISASGCGSMVKEYGEKLKHDNAYAAKAKRISALTRDLSEILIKEDLEKLVVKQTNRKTAVHCPCSLQHAQQLGGHV
EQILQRAGIELSKTQNGHLCCGSAGTYSLLQPTLSQQLLTNKINDLTIDNPDQIVTANIGCQLHLGSHASVPVKHWIELL
DPQ

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI48994913, Length=402, Percent_Identity=56.7164179104478, Blast_Score=479, Evalue=1e-136,
Organism=Escherichia coli, GI1786497, Length=219, Percent_Identity=26.4840182648402, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 44937; Mature: 44937

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTQINIKYLDHPDIQEADDILRTCVHCGFCNATCPTYQELGDERDGPRGRIYLLKQMLE
CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHH
TGDVSEKSQLHLDRCLTCRSCETTCPSGVKYGRLAEIGRDIMEEQLSRPADQRLKRWLIR
HCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KVLPYPHRFGFILRLGQLFRSFLPRDLKAQVPVKQITRPRPSQQHSRQMLVLEGCAQPSA
HHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHCEEEEECCCCCCC
TPNTNNAAARVLDRLGISLIAAPDAGCCGAVSYHIPAHEEGLAFMRRNIDAWWPYIEAGA
CCCCCHHHHHHHHHHCCEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCHHHHHHHHCCC
EAIVISASGCGSMVKEYGEKLKHDNAYAAKAKRISALTRDLSEILIKEDLEKLVVKQTNR
CEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KTAVHCPCSLQHAQQLGGHVEQILQRAGIELSKTQNGHLCCGSAGTYSLLQPTLSQQLLT
CCEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHH
NKINDLTIDNPDQIVTANIGCQLHLGSHASVPVKHWIELLDPQ
HCCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MRTQINIKYLDHPDIQEADDILRTCVHCGFCNATCPTYQELGDERDGPRGRIYLLKQMLE
CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHH
TGDVSEKSQLHLDRCLTCRSCETTCPSGVKYGRLAEIGRDIMEEQLSRPADQRLKRWLIR
HCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KVLPYPHRFGFILRLGQLFRSFLPRDLKAQVPVKQITRPRPSQQHSRQMLVLEGCAQPSA
HHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHCEEEEECCCCCCC
TPNTNNAAARVLDRLGISLIAAPDAGCCGAVSYHIPAHEEGLAFMRRNIDAWWPYIEAGA
CCCCCHHHHHHHHHHCCEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCHHHHHHHHCCC
EAIVISASGCGSMVKEYGEKLKHDNAYAAKAKRISALTRDLSEILIKEDLEKLVVKQTNR
CEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KTAVHCPCSLQHAQQLGGHVEQILQRAGIELSKTQNGHLCCGSAGTYSLLQPTLSQQLLT
CCEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHH
NKINDLTIDNPDQIVTANIGCQLHLGSHASVPVKHWIELLDPQ
HCCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8606183; 9278503 [H]