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The map label for this gene is sefC [H]

Identifier: 93006655

GI number: 93006655

Start: 2260156

End: 2262660

Strand: Direct

Name: sefC [H]

Synonym: Pcryo_1831

Alternate gene names: 93006655

Gene position: 2260156-2262660 (Clockwise)

Preceding gene: 93006654

Following gene: 93006656

Centisome position: 73.86

GC content: 50.78

Gene sequence:

>2505_bases
TTGCAAGGTGTGGCAGTATCTATTAGCCACGCCGCGGCACTGAGTGAAGATATCTCTACGAGCAGCGTTGATACCAACGC
TGCTTTTTTGCGTGTTGCGAAAGCTATGGAGCCTACAATTCAGGCTCAAACGGATACCATTGCTCAGGCTAATATAGATG
CGGATTTGGCTCAGCTTGATTTGGACCGTTATAGTGATGATGACGATGCAGGGCTGGATTTATATCTGGACGTCACGCTG
AATGGTGCCAGTAAGGGTCTAGTACACTTCGACTACCGTGATGAGCGCCTTTGGGCAACAGCAGCTATCTTGCAACAGCT
GAGCTTTGTGTTGCCTCCATCGCTACAGGCAAGCCGTGACCCTATCGCCCTTGACAGCCTACCTAAGCTGAATATTGACT
ACGATGCACGCCAGCAAACACTCACCCTTATTGCTCCACTCGATATGCTCAAGCTAGATACGACTACCCATAGTACGCGC
ACCAATAAGCGCCCAAAAGCGAGCGCCTCGCCCGGTCTGTTATTAAACTATGACCTGTATGGCAGTCAAACTCAGAATAG
CACTAAAAGTCTGAGCGCCTATACGGAGCTGCGCGCCTTTAATGCGCTTGGCGTGGTCAGCTCTACCGCCTTAACGACTG
CAAATACGGCTGCTAATGACAGTCGCCACAGTCAGTGGAAGGGTCAAACCGTGCGCCTTGATACTAGCTGGAGTCAATCC
TTCCCTGATAAGCTGCTGACGGTTCGGGCAGGCGATATTCTGACCGGTGCATTATCGTGGACGCGGTCGACACGTTTGGG
CGGTCTACAAATCGGCACCAACTTTAATCTGCAGCCTTATCGCTCGACCACACCGTTGCCATCGTTTTTTGGCTCAGCAA
CTCTACCCTCAAAGGTAGAGCTGTTTGTTGATGGTCTTAAACACTATAGCGGTGAGGTGCCCGCCGGTCCCTTTGAGCTG
GACACCGCGCCTAGTATCAGTGGCGCAGGAACGGCGCAACTGGTGGTCACCGATGCCTTGGGTCAAAGCAAGACGCTAAA
CTTTTCCTTATATGACACCCATCGACTGCTCCAGCCCGGACTGTCTGATTGGTCAGTTGAGATGGGCGCAGTGCGTGAAA
ATTATGGGACGGAATCTTTTGATTATGGGGATGCGCTTGCCGCCAGTGGAACTTGGCGCCATGGGGTGTCCAACCGTTTT
ACCGCTGAAACCCATGCCGAAGTGACGCACGGTCTCTCCAATGCAGGTGTCGGTGGGACTTGGCTATTGGGGCGCGCTGG
TGGTATTTTGTTTGCCTCGCTAGCCGCAAGCCATAGTCAGGGACAAAGCGGCATGCAGTACAGCACCAATTATTCATGGA
ATAATCGTCGCTTTAACATTGGTTTTAATGCGCTGGGAACTTCTGGTGTATATCGCGATGTAGGCTCCCAATATGGCAAT
GCCCCTGTACATCGAAGTGAGCAAATATCTACTGGTTATAGCATACCGACGCTCGGTAATTTTGGGCTAAGTTACCATCA
GGTTGCCCAAGCTGAAAAAGAGGACACGCAATTTGCCCGTGTCTCTTGGTCCAAATCCTTTGGCAGACGAGTAAGTATGA
ACCTCAATTATAACCATGACTTTGACCAATCAGCAAAAAGTAGCCTGTCGATAGGCGCATCGCTATCACTAGATCGCAAT
ATGTCAATGCGAAATAGCTTGCAACACACCGCAGCGCAAGACATCATCACAGCAGATATCTCAAAATCAGCGCCAAGCGC
AGGTGGCATTGATTGGCGCGCGCAGGTACGCCACAGCGCGGCTAGCCAATCAGACGACAGCTTAAATAGTAATACTAAAG
ACAGTACAGGCGCGTTGGCTGAGCTGAGCTACCTTGGACGCTACGGACGGGTTCAGGCTGGTATCAGTAGTAATGATGAC
AGCTATGCCACTTACGCCAGTGGCACAGGGTCACTTGTGATGATGGGCGGCGGCATGTTTCCTGCGCGCCAAATTAATAG
CGGATTTGCGGTGGTATCGACTGGCGGTATCGCTGATGTGCCCGTCCTATTGCAAAACAATCCTATTGGCACGACCAACC
ACCGCGGGCTGCTGCTAGTGACACCGCTCAATGCCTATCAAGAGAATAAGATTGCTATCGACCCCATGCAGTTGCCTGCT
GACTTACGTATTAATAAAGTCAGTCTGGACGCAACCCCAACCGACCGTGCCGGAGTTATGGTCGCTTTTGATATTACCCC
TGTGCGCTCAGCAACCATTGTATTAATCGATAGCGATGAGCAACCGATTGCACTTGGTAGTCAAGTCACCTTGATCTCCA
ACGAAGATACGCCAACCACTGTAGTGGGTTTTGATGGTGAGGTATATTTGGATACATTGGATGCCCACAATACACTGGAG
GTCACTACCCCTGCTGATGGCATTTGTACTGTGCGCTTTAAGTACACCAAGCAAGGCGATGAGATTCCGCTCCTCGGTCC
TTTTATCTGTAAAAAGGTACAATAA

Upstream 100 bases:

>100_bases
TCCGTGCTAACTTCAGGGGGTAAATTCAAGGTTATGCTAAATGGTACACAGACGACACCTGACGTCACACTGGACACAAA
CACTCGCTAAAGTCGTTTTT

Downstream 100 bases:

>100_bases
TGTTACGACTTCAAAGCTATCATCTATTGATCATACTAGTAGTGGGTTTATTCTTAGCCAACCCTATAACCGCAAATGCC
GCTATTAGCTGTACTCAAGC

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 834; Mature: 834

Protein sequence:

>834_residues
MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLDLDRYSDDDDAGLDLYLDVTL
NGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRDPIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTR
TNKRPKASASPGLLLNYDLYGSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS
FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVELFVDGLKHYSGEVPAGPFEL
DTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPGLSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRF
TAETHAEVTHGLSNAGVGGTWLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN
APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHDFDQSAKSSLSIGASLSLDRN
MSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSAASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDD
SYATYASGTGSLVMMGGGMFPARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA
DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTTVVGFDGEVYLDTLDAHNTLE
VTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ

Sequences:

>Translated_834_residues
MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLDLDRYSDDDDAGLDLYLDVTL
NGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRDPIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTR
TNKRPKASASPGLLLNYDLYGSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS
FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVELFVDGLKHYSGEVPAGPFEL
DTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPGLSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRF
TAETHAEVTHGLSNAGVGGTWLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN
APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHDFDQSAKSSLSIGASLSLDRN
MSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSAASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDD
SYATYASGTGSLVMMGGGMFPARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA
DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTTVVGFDGEVYLDTLDAHNTLE
VTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ
>Mature_834_residues
MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLDLDRYSDDDDAGLDLYLDVTL
NGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRDPIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTR
TNKRPKASASPGLLLNYDLYGSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS
FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVELFVDGLKHYSGEVPAGPFEL
DTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPGLSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRF
TAETHAEVTHGLSNAGVGGTWLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN
APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHDFDQSAKSSLSIGASLSLDRN
MSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSAASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDD
SYATYASGTGSLVMMGGGMFPARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA
DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTTVVGFDGEVYLDTLDAHNTLE
VTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ

Specific function: Involved in the export and assembly of the sefA fimbrial subunit [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=294, Percent_Identity=25.8503401360544, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 89414; Mature: 89414

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLD
CCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
LDRYSDDDDAGLDLYLDVTLNGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRD
HHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC
PIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTRTNKRPKASASPGLLLNYDLY
CEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECC
GSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCC
FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVE
CCCCEEEEECCCEEEEHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHH
LFVDGLKHYSGEVPAGPFELDTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPG
HHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECHHHHHCCC
LSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRFTAETHAEVTHGLSNAGVGGT
CCCCEEEHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCE
WLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN
EEEECCCCCEEEHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHCCC
APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHD
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHCCCCEEEEEECCCCC
FDQSAKSSLSIGASLSLDRNMSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSA
CCHHHHHHEECCEEEEECCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHH
ASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDDSYATYASGTGSLVMMGGGMF
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEECCCC
PARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA
CHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCC
DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTT
CCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEECCEEEEEECCCCCEE
VVGFDGEVYLDTLDAHNTLEVTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ
EEECCCEEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCEECHHHHCCCC
>Mature Secondary Structure
MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLD
CCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
LDRYSDDDDAGLDLYLDVTLNGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRD
HHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC
PIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTRTNKRPKASASPGLLLNYDLY
CEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECC
GSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCC
FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVE
CCCCEEEEECCCEEEEHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHH
LFVDGLKHYSGEVPAGPFELDTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPG
HHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECHHHHHCCC
LSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRFTAETHAEVTHGLSNAGVGGT
CCCCEEEHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCE
WLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN
EEEECCCCCEEEHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHCCC
APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHD
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHCCCCEEEEEECCCCC
FDQSAKSSLSIGASLSLDRNMSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSA
CCHHHHHHEECCEEEEECCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHH
ASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDDSYATYASGTGSLVMMGGGMF
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEECCCC
PARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA
CHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCC
DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTT
CCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEECCEEEEEECCCCCEE
VVGFDGEVYLDTLDAHNTLEVTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ
EEECCCEEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCEECHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8097515 [H]