Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
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Accession | NC_007969 |
Length | 3,059,876 |
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The map label for this gene is alaS [H]
Identifier: 93006462
GI number: 93006462
Start: 2015928
End: 2018600
Strand: Direct
Name: alaS [H]
Synonym: Pcryo_1638
Alternate gene names: 93006462
Gene position: 2015928-2018600 (Clockwise)
Preceding gene: 93006461
Following gene: 93006463
Centisome position: 65.88
GC content: 46.54
Gene sequence:
>2673_bases GTGAGCCAGCCATTTCGCTCAGCCGATATTCGTCAAGCTTTTATCGATTTTTTCATAAGCAAGCAGCATACCCCCGTCGC CTCATCGAGTTTGATTCCGCATAATGACCCGACATTGCTATTTACCAATGCCGGTATGAATCAGTTTAAAGAGACATTTT TGGGTATGGAGCCACGTGATTATACGCGTGCAGTAACCTCGCAAAAGTGCGTAAGAGCGGGCGGCAAGCATAATGATTTG GATAACGTCGGCTATACGGCGCGCCATCATACGTTTTTTGAAATGCTTGGTAATTTCTCTTTTGGCGATTATTTTAAGCA AGCCGGTATTGGTTATATTTGGGAATTTTTGACCTCAGATGAATGGCTAGCAATCGATAAAAATCGCTTGTATGTGACCA TTTATGAGACTGACGACGAAGCCTTTGATATTTGGCATAAAGACATCGGTATTCCTAGCGAGCGCATTATCCGTATTGGC GATAATAAAGGTGCGCCTTACGCCTCAGACAACTTTTGGACGATGGGCGATACCGGTCCTTGTGGTCCTTGTACCGAAGT CTTTTATGACCATGGTGCTGATATCGAAGGCGGTCTACCGGGCACACCTGAAGAAGATGGCGACCGTTATATCGAGATTT GGAACTGTGTCTTTATGCAGTTTAATCGTCAAAAAGACGGCTCTATGTTGCCGCTACCAGCGCCAAGCGTAGATACTGGC ATGGGACTTGAGCGTATCAGCGCCATCATGCAAGGCGTCCATGGCAACTACGAGATAGATTTGTTTGTACATTTGATGGA TGCGGCGGCTGAGATTTTAGAGATTGAAAACCAGCAACAATCGTCATTAAAAGTCATCGCTGACCATATTCGCGCTGTTT CATTTTTGATTGCTGATGGCGTCACCCCAAGCAACGAAGGTCGTGGTTACGTACTGCGCCGTATCATTCGTCGTGCAGTA CGTCATGGCAATAAGCTTGGTGCTGACAGTGAGTTTTTCTATAAAATGGTCGCGCCTTTGGTTGCTGAAATGGGTACGGC GTATCCTGAGCTCAAAGATAAGCAAAGCGTCATTGAAAATGCCATTCAAAAAGAAGAAACCCAATTTGCCAAAACCTTAG CACAAGGTTTACGTCTGCTTGCCAGCGAATTGGAAGGTCTAAAAGATGGTGATACCCTTTCTGGCGAAGCGGCATTTAAG CTATATGATACCTATGGCTTCCCTGTTGACTTGACCGCTGATATCACCCGTGAGCGCGGTATTGTGATTGATGAAGCCGA GTTTGATGAACATATGCAAGCACAGCGTGAACGTGCGCGTGATGCAGGCAAGTTCGACGTTGATTACAGTAGTGTCATTC AAGTAGAAAATCCAACGACCTTTATCGGTTATGAGCAGCTTGAAGAAGAAGGTGTCACGATTGATGCGCTGTATCAAGAT GGCAATCCAGCCGATAGCCTAACTGAAGGTATGGAAGGCGTTATTGTCCTTGACCGTACACCGTTTTATGCGGAAGGCGG TGGTCAGGTTGGTGAGCTTGGTGAGATTCGTACCGCATCAGGGGTCTTTGAAGTCCAAGATACTAAAAAATCTGGTCAAG CCATCATTCACTATGGTGTCGTGACCATGGGTGACATTAGTACTAAGCAAACCGCTGATGCGCAAGTATTGTCGAGTATT CGCGCAGCCAGTGCCAAAAACCACTCTGCCACGCATCTCTTACATGCTGCATTAAGAGAAGTATTGGGCGACGCGGTCAC GCAAAAAGGCTCGCTAGTATCAAGCGAAGTATTGCGTTTTGATTTCTCCTATGACAAGCCCGTCAGCACTGCTGAAATTA CGCGTATCGAACGCTTAGTCAATGAGCAAATTCAAGCCAACACCCCTGCTCGCATCGAGAATATGTCTATTGACGAAGCG ATGAAACAAGGTGCAATGGCATTGTTTGGCGAAAAATATGGTAGTGATGTTCGCGTCTTAACCATGGGTACTGGCAGTAT CATCGATGGTCAACGTAAGCCCTTCTCTATTGAACTTTGTGGTGGTTTGCACGTTAAACGTACCGGTGATATTGGTGTGT TAAAAATCACCAGCGAATCAGGTATCGCTGCTGGCATCCGCCGTATTGAAGCTGTTACTGGCATGAATGCGATTAAAAAT ATCCAGCAAAGTGAGCAGCAGCTGAGCGAGCTTGCCAGTCAGCTAAAAGTTAAACGTCCAGAGGTTGCACAGCGCGTGCG TACCATGGCGGATAAGCAGCGCGAACTTGAGAAACAACTAGAGCGTTTAGAGCAAAAAATCGCCAGCGCCCAAGCCGCAA ACTTGCTTGATGACGTGCAAACCATCGCTGGTACGCCAGTACTTATCAGTACCTTAAGTGGTATCGATGGTAAATCTATC CGTACGTTGATGGACGATATCAAATCAAAACTACCAGATAGTGTGATTGTATTGATTGGTGATAAAGATGAGCAGTTAGC ACTAGCCGCCAGTGTGGCAAAGTCTGTGACTGCGAAAGTAAAAGCCGGTGACATCATTCGTCATTTGGCAAGTGAGCTTG GTGGTAAAGGTGGTGGTAAACCTGACTATGCTCAAGGCGGCGCGCCAAAAGCTGCCAATACTAATGCTGTTGTCAATGCG CTACCTGCTTGGATTGCGGACCAGCTTGGCTAA
Upstream 100 bases:
>100_bases TACTTAGGAATCTTCAACACCCTTGGCACGTTTGTGCTAAAATCGCTTGCAAAATTATTTTACTTATTCTACTAAATACA TCCGTCAGTAAGGAGCCGCT
Downstream 100 bases:
>100_bases TACCTTAAGCTGAGCAATATTGTACTAAATCAGAGATAAGATACGCGATTGGCTATAACGGTTATAACCAATCGCCATGT ATCTAATGTCTACTGATACT
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 890; Mature: 889
Protein sequence:
>890_residues MSQPFRSADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVTSQKCVRAGGKHNDL DNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAIDKNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIG DNKGAPYASDNFWTMGDTGPCGPCTEVFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTG MGLERISAIMQGVHGNYEIDLFVHLMDAAAEILEIENQQQSSLKVIADHIRAVSFLIADGVTPSNEGRGYVLRRIIRRAV RHGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIENAIQKEETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFK LYDTYGFPVDLTADITRERGIVIDEAEFDEHMQAQRERARDAGKFDVDYSSVIQVENPTTFIGYEQLEEEGVTIDALYQD GNPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGEIRTASGVFEVQDTKKSGQAIIHYGVVTMGDISTKQTADAQVLSSI RAASAKNHSATHLLHAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSTAEITRIERLVNEQIQANTPARIENMSIDEA MKQGAMALFGEKYGSDVRVLTMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVLKITSESGIAAGIRRIEAVTGMNAIKN IQQSEQQLSELASQLKVKRPEVAQRVRTMADKQRELEKQLERLEQKIASAQAANLLDDVQTIAGTPVLISTLSGIDGKSI RTLMDDIKSKLPDSVIVLIGDKDEQLALAASVAKSVTAKVKAGDIIRHLASELGGKGGGKPDYAQGGAPKAANTNAVVNA LPAWIADQLG
Sequences:
>Translated_890_residues MSQPFRSADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVTSQKCVRAGGKHNDL DNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAIDKNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIG DNKGAPYASDNFWTMGDTGPCGPCTEVFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTG MGLERISAIMQGVHGNYEIDLFVHLMDAAAEILEIENQQQSSLKVIADHIRAVSFLIADGVTPSNEGRGYVLRRIIRRAV RHGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIENAIQKEETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFK LYDTYGFPVDLTADITRERGIVIDEAEFDEHMQAQRERARDAGKFDVDYSSVIQVENPTTFIGYEQLEEEGVTIDALYQD GNPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGEIRTASGVFEVQDTKKSGQAIIHYGVVTMGDISTKQTADAQVLSSI RAASAKNHSATHLLHAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSTAEITRIERLVNEQIQANTPARIENMSIDEA MKQGAMALFGEKYGSDVRVLTMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVLKITSESGIAAGIRRIEAVTGMNAIKN IQQSEQQLSELASQLKVKRPEVAQRVRTMADKQRELEKQLERLEQKIASAQAANLLDDVQTIAGTPVLISTLSGIDGKSI RTLMDDIKSKLPDSVIVLIGDKDEQLALAASVAKSVTAKVKAGDIIRHLASELGGKGGGKPDYAQGGAPKAANTNAVVNA LPAWIADQLG >Mature_889_residues SQPFRSADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVTSQKCVRAGGKHNDLD NVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAIDKNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGD NKGAPYASDNFWTMGDTGPCGPCTEVFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTGM GLERISAIMQGVHGNYEIDLFVHLMDAAAEILEIENQQQSSLKVIADHIRAVSFLIADGVTPSNEGRGYVLRRIIRRAVR HGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIENAIQKEETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFKL YDTYGFPVDLTADITRERGIVIDEAEFDEHMQAQRERARDAGKFDVDYSSVIQVENPTTFIGYEQLEEEGVTIDALYQDG NPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGEIRTASGVFEVQDTKKSGQAIIHYGVVTMGDISTKQTADAQVLSSIR AASAKNHSATHLLHAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSTAEITRIERLVNEQIQANTPARIENMSIDEAM KQGAMALFGEKYGSDVRVLTMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVLKITSESGIAAGIRRIEAVTGMNAIKNI QQSEQQLSELASQLKVKRPEVAQRVRTMADKQRELEKQLERLEQKIASAQAANLLDDVQTIAGTPVLISTLSGIDGKSIR TLMDDIKSKLPDSVIVLIGDKDEQLALAASVAKSVTAKVKAGDIIRHLASELGGKGGGKPDYAQGGAPKAANTNAVVNAL PAWIADQLG
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=955, Percent_Identity=36.4397905759162, Blast_Score=522, Evalue=1e-148, Organism=Homo sapiens, GI38569417, Length=943, Percent_Identity=32.0254506892895, Blast_Score=422, Evalue=1e-118, Organism=Escherichia coli, GI1789048, Length=883, Percent_Identity=57.6443941109853, Blast_Score=1050, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=957, Percent_Identity=35.7366771159875, Blast_Score=517, Evalue=1e-147, Organism=Caenorhabditis elegans, GI17536681, Length=749, Percent_Identity=34.1789052069426, Blast_Score=387, Evalue=1e-107, Organism=Saccharomyces cerevisiae, GI6324911, Length=968, Percent_Identity=37.5, Blast_Score=549, Evalue=1e-157, Organism=Drosophila melanogaster, GI24582809, Length=964, Percent_Identity=36.7219917012448, Blast_Score=552, Evalue=1e-157, Organism=Drosophila melanogaster, GI45552267, Length=964, Percent_Identity=36.7219917012448, Blast_Score=552, Evalue=1e-157, Organism=Drosophila melanogaster, GI24658214, Length=487, Percent_Identity=36.3449691991786, Blast_Score=292, Evalue=7e-79,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 97401; Mature: 97270
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPFRSADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRD CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCHH YTRAVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSD HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCC EWLAIDKNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGP CEEEEECCEEEEEEEECCCCHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCEECCCCCC CGPCTEVFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTG CCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC MGLERISAIMQGVHGNYEIDLFVHLMDAAAEILEIENQQQSSLKVIADHIRAVSFLIADG CCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC VTPSNEGRGYVLRRIIRRAVRHGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIEN CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AIQKEETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFKLYDTYGFPVDLTADITRERG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEHHHHCCCC IVIDEAEFDEHMQAQRERARDAGKFDVDYSSVIQVENPTTFIGYEQLEEEGVTIDALYQD CEEECHHHHHHHHHHHHHHHCCCCCCCCHHHEEEECCCCEEECHHHHHHCCCEEEEEECC GNPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGEIRTASGVFEVQDTKKSGQAIIHYGV CCCHHHHHCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECC VTMGDISTKQTADAQVLSSIRAASAKNHSATHLLHAALREVLGDAVTQKGSLVSSEVLRF EEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEE DFSYDKPVSTAEITRIERLVNEQIQANTPARIENMSIDEAMKQGAMALFGEKYGSDVRVL ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCEEEE TMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVLKITSESGIAAGIRRIEAVTGMNAIKN EECCCCEECCCCCCEEEEEECCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH IQQSEQQLSELASQLKVKRPEVAQRVRTMADKQRELEKQLERLEQKIASAQAANLLDDVQ HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIAGTPVLISTLSGIDGKSIRTLMDDIKSKLPDSVIVLIGDKDEQLALAASVAKSVTAKV HHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHH KAGDIIRHLASELGGKGGGKPDYAQGGAPKAANTNAVVNALPAWIADQLG HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure SQPFRSADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRD CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCHH YTRAVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSD HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCC EWLAIDKNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGP CEEEEECCEEEEEEEECCCCHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCEECCCCCC CGPCTEVFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTG CCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC MGLERISAIMQGVHGNYEIDLFVHLMDAAAEILEIENQQQSSLKVIADHIRAVSFLIADG CCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC VTPSNEGRGYVLRRIIRRAVRHGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIEN CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AIQKEETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFKLYDTYGFPVDLTADITRERG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEHHHHCCCC IVIDEAEFDEHMQAQRERARDAGKFDVDYSSVIQVENPTTFIGYEQLEEEGVTIDALYQD CEEECHHHHHHHHHHHHHHHCCCCCCCCHHHEEEECCCCEEECHHHHHHCCCEEEEEECC GNPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGEIRTASGVFEVQDTKKSGQAIIHYGV CCCHHHHHCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECC VTMGDISTKQTADAQVLSSIRAASAKNHSATHLLHAALREVLGDAVTQKGSLVSSEVLRF EEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEE DFSYDKPVSTAEITRIERLVNEQIQANTPARIENMSIDEAMKQGAMALFGEKYGSDVRVL ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCEEEE TMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVLKITSESGIAAGIRRIEAVTGMNAIKN EECCCCEECCCCCCEEEEEECCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH IQQSEQQLSELASQLKVKRPEVAQRVRTMADKQRELEKQLERLEQKIASAQAANLLDDVQ HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIAGTPVLISTLSGIDGKSIRTLMDDIKSKLPDSVIVLIGDKDEQLALAASVAKSVTAKV HHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHH KAGDIIRHLASELGGKGGGKPDYAQGGAPKAANTNAVVNALPAWIADQLG HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA